ensemble_md.analysis ensemble_md.analysis.analyze_traj .. automodule:: ensemble_md.analysis.analyze_traj :members: :undoc-members: ensemble_md.analysis.analyze_matrix .. automodule:: ensemble_md.analysis.analyze_matrix :members: :undoc-members: ensemble_md.analysis.analyze_free_energy .. automodule:: ensemble_md.analysis.analyze_free_energy :members: :undoc-members: ensemble_md.analysis.synthesize_data .. automodule:: ensemble_md.analysis.synthesize_data :members: :undoc-members: ensemble_md.analysis.clustering .. automodule:: ensemble_md.analysis.clustering :members: :undoc-members: ensemble_md.analysis.msm_analysis .. automodule:: ensemble_md.analysis.msm_analysis :members: :undoc-members: