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Error in Example of vignette #5

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mominchen opened this issue Jul 17, 2017 · 1 comment
Open

Error in Example of vignette #5

mominchen opened this issue Jul 17, 2017 · 1 comment

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@mominchen
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Hi,
I just got this error by using the following command of your vignette: (running package version: 1.0.2)

GOChord(chord, space = 0.02, gene.order = 'logFC', gene.space = 0.25, gene.size = 5)
Error: Aesthetics must be either length 1 or the same as the data (55952): x, y, group, fill

Additional errors:

1: In min(df_genes$logFC) :
no argument for min; return Inf
2: In max(df_genes$logFC) :
no argument for max; return -Inf
3: In min(df_genes$logFC) :
no argument for min; return Inf
4: In max(df_genes$logFC) :
no argument for max; return -Inf
5: Using size for a discrete variable is not advised.

Would be glad to know how I can fix this. Thanks in advance

@NINNA74
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NINNA74 commented Oct 15, 2017

A line is missing in the demo guide
the complete command is:

chord <- chord_dat(data = circ, genes = EC$genes, process = EC$process)
GOChord(chord, space = 0.02, gene.order = 'logFC', gene.space = 0.25, gene.size = 5)

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