/
Basis.c
11391 lines (10807 loc) · 485 KB
/
Basis.c
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#if CYTHON_COMPILING_IN_CPYTHON
#define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x))
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#if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
static int __Pyx_sys_getdefaultencoding_not_ascii;
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PyObject* default_encoding = NULL;
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PyObject* ascii_chars_b = NULL;
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sys = PyImport_ImportModule("sys");
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default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL);
Py_DECREF(sys);
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PyErr_Format(
PyExc_ValueError,
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goto bad;
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Py_DECREF(ascii_chars_u);
Py_DECREF(ascii_chars_b);
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Py_DECREF(default_encoding);
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Py_XDECREF(default_encoding);
Py_XDECREF(ascii_chars_u);
Py_XDECREF(ascii_chars_b);
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#if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT && PY_MAJOR_VERSION >= 3
#define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_DecodeUTF8(c_str, size, NULL)
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#define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_Decode(c_str, size, __PYX_DEFAULT_STRING_ENCODING, NULL)
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/* Test for GCC > 2.95 */
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#define likely(x) __builtin_expect(!!(x), 1)
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static PyObject *__pyx_m;
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static const char *__pyx_f[] = {
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#define IS_UNSIGNED(type) (((type) -1) > 0)
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struct __Pyx_StructField_* fields;
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int ndim;
char typegroup;
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int flags;
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/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":723
* # in Cython to enable them only on the right systems.
*
* ctypedef npy_int8 int8_t # <<<<<<<<<<<<<<
* ctypedef npy_int16 int16_t
* ctypedef npy_int32 int32_t
*/
typedef npy_int8 __pyx_t_5numpy_int8_t;
/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":724
*
* ctypedef npy_int8 int8_t
* ctypedef npy_int16 int16_t # <<<<<<<<<<<<<<
* ctypedef npy_int32 int32_t
* ctypedef npy_int64 int64_t
*/
typedef npy_int16 __pyx_t_5numpy_int16_t;
/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":725
* ctypedef npy_int8 int8_t
* ctypedef npy_int16 int16_t
* ctypedef npy_int32 int32_t # <<<<<<<<<<<<<<
* ctypedef npy_int64 int64_t
* #ctypedef npy_int96 int96_t
*/
typedef npy_int32 __pyx_t_5numpy_int32_t;
/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":726
* ctypedef npy_int16 int16_t
* ctypedef npy_int32 int32_t
* ctypedef npy_int64 int64_t # <<<<<<<<<<<<<<
* #ctypedef npy_int96 int96_t
* #ctypedef npy_int128 int128_t
*/
typedef npy_int64 __pyx_t_5numpy_int64_t;
/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":730
* #ctypedef npy_int128 int128_t
*
* ctypedef npy_uint8 uint8_t # <<<<<<<<<<<<<<
* ctypedef npy_uint16 uint16_t
* ctypedef npy_uint32 uint32_t
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typedef npy_uint8 __pyx_t_5numpy_uint8_t;
/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":731
*
* ctypedef npy_uint8 uint8_t
* ctypedef npy_uint16 uint16_t # <<<<<<<<<<<<<<
* ctypedef npy_uint32 uint32_t
* ctypedef npy_uint64 uint64_t
*/
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/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":732
* ctypedef npy_uint8 uint8_t
* ctypedef npy_uint16 uint16_t
* ctypedef npy_uint32 uint32_t # <<<<<<<<<<<<<<
* ctypedef npy_uint64 uint64_t
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typedef npy_uint32 __pyx_t_5numpy_uint32_t;
/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":733
* ctypedef npy_uint16 uint16_t
* ctypedef npy_uint32 uint32_t
* ctypedef npy_uint64 uint64_t # <<<<<<<<<<<<<<
* #ctypedef npy_uint96 uint96_t
* #ctypedef npy_uint128 uint128_t
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typedef npy_uint64 __pyx_t_5numpy_uint64_t;
/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":737
* #ctypedef npy_uint128 uint128_t
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* ctypedef npy_float32 float32_t # <<<<<<<<<<<<<<
* ctypedef npy_float64 float64_t
* #ctypedef npy_float80 float80_t
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/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":738
*
* ctypedef npy_float32 float32_t
* ctypedef npy_float64 float64_t # <<<<<<<<<<<<<<
* #ctypedef npy_float80 float80_t
* #ctypedef npy_float128 float128_t
*/
typedef npy_float64 __pyx_t_5numpy_float64_t;
/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":747
* # The int types are mapped a bit surprising --
* # numpy.int corresponds to 'l' and numpy.long to 'q'
* ctypedef npy_long int_t # <<<<<<<<<<<<<<
* ctypedef npy_longlong long_t
* ctypedef npy_longlong longlong_t
*/
typedef npy_long __pyx_t_5numpy_int_t;
/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":748
* # numpy.int corresponds to 'l' and numpy.long to 'q'
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* ctypedef npy_longlong long_t # <<<<<<<<<<<<<<
* ctypedef npy_longlong longlong_t
*
*/
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/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":749
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*
* ctypedef npy_ulong uint_t
*/
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/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":751
* ctypedef npy_longlong longlong_t
*
* ctypedef npy_ulong uint_t # <<<<<<<<<<<<<<
* ctypedef npy_ulonglong ulong_t
* ctypedef npy_ulonglong ulonglong_t
*/
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/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":752
*
* ctypedef npy_ulong uint_t
* ctypedef npy_ulonglong ulong_t # <<<<<<<<<<<<<<
* ctypedef npy_ulonglong ulonglong_t
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*/
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/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":753
* ctypedef npy_ulong uint_t
* ctypedef npy_ulonglong ulong_t
* ctypedef npy_ulonglong ulonglong_t # <<<<<<<<<<<<<<
*
* ctypedef npy_intp intp_t
*/
typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t;
/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":755
* ctypedef npy_ulonglong ulonglong_t
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*/
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/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":756
*
* ctypedef npy_intp intp_t
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*
* ctypedef npy_double float_t
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typedef npy_uintp __pyx_t_5numpy_uintp_t;
/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":758
* ctypedef npy_uintp uintp_t
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* ctypedef npy_double float_t # <<<<<<<<<<<<<<
* ctypedef npy_double double_t
* ctypedef npy_longdouble longdouble_t
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/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":759
*
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typedef npy_double __pyx_t_5numpy_double_t;
/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":760
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/* "ForcePy/Basis.pyx":19
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struct __pyx_obj_7ForcePy_5Basis_Quartic;
struct __pyx_obj_7ForcePy_5Basis_Gaussian;
/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":762
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/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":764
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/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":766
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struct __pyx_vtabstruct_7ForcePy_5Basis_Quartic *__pyx_vtab;
int basis_n;
__pyx_t_7ForcePy_5Basis_FTYPE_t inv_width;
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/* "ForcePy/Basis.pyx":137
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*
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struct __pyx_vtabstruct_7ForcePy_5Basis_Gaussian *__pyx_vtab;
int basis_n;
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#define __Pyx_XDECREF_SET(r, v) do { \
PyObject *tmp = (PyObject *) r; \
r = v; __Pyx_XDECREF(tmp); \
} while (0)
#define __Pyx_DECREF_SET(r, v) do { \
PyObject *tmp = (PyObject *) r; \
r = v; __Pyx_DECREF(tmp); \
} while (0)
#define __Pyx_CLEAR(r) do { PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);} while(0)
#define __Pyx_XCLEAR(r) do { if((r) != NULL) {PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);}} while(0)
#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name) {
PyTypeObject* tp = Py_TYPE(obj);
if (likely(tp->tp_getattro))
return tp->tp_getattro(obj, attr_name);
#if PY_MAJOR_VERSION < 3
if (likely(tp->tp_getattr))
return tp->tp_getattr(obj, PyString_AS_STRING(attr_name));
#endif
return PyObject_GetAttr(obj, attr_name);
}
#else
#define __Pyx_PyObject_GetAttrStr(o,n) PyObject_GetAttr(o,n)
#endif
static PyObject *__Pyx_GetBuiltinName(PyObject *name);
static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact,
Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found);
static void __Pyx_RaiseDoubleKeywordsError(const char* func_name, PyObject* kw_name);
static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[], \
PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args, \
const char* function_name);
static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name);
#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw);
#else
#define __Pyx_PyObject_Call(func, arg, kw) PyObject_Call(func, arg, kw)
#endif
#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg);
#endif
static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg);
static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed,
const char *name, int exact);
static CYTHON_INLINE int __Pyx_GetBufferAndValidate(Py_buffer* buf, PyObject* obj,
__Pyx_TypeInfo* dtype, int flags, int nd, int cast, __Pyx_BufFmt_StackElem* stack);
static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info);
#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func);
#else
#define __Pyx_PyObject_CallNoArg(func) __Pyx_PyObject_Call(func, __pyx_empty_tuple, NULL)
#endif
static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb);
static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb);
#define __Pyx_GetItemInt(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck) \
(__Pyx_fits_Py_ssize_t(i, type, is_signed) ? \
__Pyx_GetItemInt_Fast(o, (Py_ssize_t)i, is_list, wraparound, boundscheck) : \
(is_list ? (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL) : \
__Pyx_GetItemInt_Generic(o, to_py_func(i))))
#define __Pyx_GetItemInt_List(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck) \
(__Pyx_fits_Py_ssize_t(i, type, is_signed) ? \
__Pyx_GetItemInt_List_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) : \
(PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL))
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i,
int wraparound, int boundscheck);
#define __Pyx_GetItemInt_Tuple(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck) \
(__Pyx_fits_Py_ssize_t(i, type, is_signed) ? \
__Pyx_GetItemInt_Tuple_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) : \
(PyErr_SetString(PyExc_IndexError, "tuple index out of range"), (PyObject*)NULL))
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i,
int wraparound, int boundscheck);
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j);
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i,
int is_list, int wraparound, int boundscheck);
#define __Pyx_SetItemInt(o, i, v, type, is_signed, to_py_func, is_list, wraparound, boundscheck) \
(__Pyx_fits_Py_ssize_t(i, type, is_signed) ? \
__Pyx_SetItemInt_Fast(o, (Py_ssize_t)i, v, is_list, wraparound, boundscheck) : \
(is_list ? (PyErr_SetString(PyExc_IndexError, "list assignment index out of range"), -1) : \
__Pyx_SetItemInt_Generic(o, to_py_func(i), v)))
static CYTHON_INLINE int __Pyx_SetItemInt_Generic(PyObject *o, PyObject *j, PyObject *v);
static CYTHON_INLINE int __Pyx_SetItemInt_Fast(PyObject *o, Py_ssize_t i, PyObject *v,
int is_list, int wraparound, int boundscheck);
static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type);
static void __Pyx_RaiseBufferIndexError(int axis);
#define __Pyx_BufPtrStrided1d(type, buf, i0, s0) (type)((char*)buf + i0 * s0)
#ifndef __PYX_FORCE_INIT_THREADS
#define __PYX_FORCE_INIT_THREADS 0
#endif
static void __Pyx_WriteUnraisable(const char *name, int clineno,
int lineno, const char *filename,
int full_traceback);
static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause);
static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected);
static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index);
static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void);
static int __Pyx_SetVtable(PyObject *dict, void *vtable);
static PyObject *__Pyx_CalculateMetaclass(PyTypeObject *metaclass, PyObject *bases);
static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type);
#define __Pyx_CyFunction_USED 1
#include <structmember.h>
#define __Pyx_CYFUNCTION_STATICMETHOD 0x01
#define __Pyx_CYFUNCTION_CLASSMETHOD 0x02
#define __Pyx_CYFUNCTION_CCLASS 0x04
#define __Pyx_CyFunction_GetClosure(f) \
(((__pyx_CyFunctionObject *) (f))->func_closure)
#define __Pyx_CyFunction_GetClassObj(f) \
(((__pyx_CyFunctionObject *) (f))->func_classobj)
#define __Pyx_CyFunction_Defaults(type, f) \
((type *)(((__pyx_CyFunctionObject *) (f))->defaults))
#define __Pyx_CyFunction_SetDefaultsGetter(f, g) \
((__pyx_CyFunctionObject *) (f))->defaults_getter = (g)
typedef struct {
PyCFunctionObject func;
#if PY_VERSION_HEX < 0x030500A0