spelling_words.dict

ActionVolume
abmd
ARG
adjmat
arccos
Antiparallel
antiparallel
ay
az
ballone
basisf
belfast
BerndAdaptivePath
Branduardi
Bravais
Openmp
lincs
HSP
HLE
HSE
GLH
GLU
UNK
TER
NME
iter
cb
hn
nh
protonation
CAshifts
CBshift
Cshifts
Hshifts
HAshifts
HBshifts
metainference
camshift
bz
camilloni
CamShift
Capelli
cav
cdot
Chebyshev
contactmap
contactmatrix
colvar
colvars
CMDIST
committor
crystallinity
CVs
cx
cy
cz
dat
dfs
Diaz
diagonalizing
dihedral
dimensionality
dimred
DSCORE
dn
dists
dkor
dk
je
endlink
hs
Ensing
endverbatim
expsaxs
FES
fes
FMT
frac
FUNC
gaussian
GeTe
GPATH
Granata
gromacs
histogrambead
html
intra
ij
ijk
isdb
isometry
jk
jt
kaolinite
Kohlhoff
labelled
le
legendre
linearexpansion
lj
ln
orthonormal
overline
mathrm
mathbf
mcolv
md
MDS
Mises
MPI
mth
multicolvar
multicolvars
multicolvarfunction
MultiColvarFilter
mymodules
mypath
myprotein
nan
NATOMS
NBIN
ndata
nm
pbc
PCA
pietrucci
polycrystal
png
pdb
Robustelli
provasi
rmsd
saxs
secondarystructure
SMACOF
sqrt
Steinhardt
subregion
switchingfunction
textrm
tribello
Trp
Valsson
Variationally
variationally
variational
vatom
ves
VES
virial
Von
Voth
xyz
regtest
regtests
sigmaMean
acceptSigma
histidine
CBshifts
Nshifts
expca
expcb
expco
expha
exphn
expha
exphn
expnh
acceptScale
biasDer
ftilde
ftilde
Metadynamics
metadynamics
Debye
Huckel
electrostatically
dimers
dimerized
un
centroid
mindist
TOL
kernelfunctions
translational
vibrational
DIA
HY
OY
ABF
eABF
drr
UI
Lelievre
Zheng
overdamped
abf
PMF
Fu
Haohao
Lesage
UIestimator
Langevin
egABF
Zhao
drrstate
egABF
xdrfile
gro
xtc
trr
xdrfile
VMD
GUI
gnuplot
histoA
deriv
mc
mcfile
traj
awk
ixyz
newmc
Marquadt
COVAR
observables
prefactor
prefactors
adaptively
Levenberg
hocky
LM
webpage
cgds
POSIX
REWEIGHT
chebyshev
REGRES
WITHSURFACE
MGAUSS
MOUTLIERS
LOGN
SEM
NMR
chunksize
TAGN
solvation
EEF
Waals
CHARMM
NDX
der
cryo
atomistic
hrex
cvlabel
reweighting
eRMSD
nucleobase
nucleobases
pyrimdines
vectorial
membered
lcs
xy
Rescale
rescaling
TAMD
dAFED
cltools
multicomponents
mincomp
maxcomp
isocontour
mycontour
isocontours
Lennard
rototranslate
rototranslational
ligand
invariance
DFT
FFTW
FFT
sumhills
Spiwok
xz
yz
ndx
Asphericiry
ASPHERICITY
Acylindricity
ACYLINDRICITY
Anisotropy
GTPC
HBOND
acceptor
pamm
HBPAMM
electronegative
preprocessor
intermolecular
Karplus
CCG
NCG
Voronoi
cpp
src
dylib
Lechner
Dellago
entropic
manyrestraints
matheval
pippo
modelling
reweight
posteriori
LAGMULT
INEQUAL
ps
timestep
reweighted
RDCs
MFILTER
MutiColvarFunctions
achiral
resnumbers
chainIDs
topol
gmx
GLY
dna
rna
Davide
GC
chainresiduenum
tpr
editconf
Jarzynski
residuenum
MTRANSFORM
Kearsley
iteratively
SGD
targetdist
coeffs
epath
gpath
PBMetaD
ENDMDL
covar
MAHALONOBIS
Mahalonobis
anisotropic
dipolar
gyromagnetic
GSL
CRYST
piv
namespaces
OSX
libplumedKernel
parallelize
OpenMP
NAMD
ns
Larmor
allv
Pseudorotation
Pople
endo
pseudorotation
pseudorotations
Cremer
NaCl
normed
DCs
conformational
reselect
RESELECT
rbias
ARRAYFIRE
SKETCHMAP
CONJGRAD
POINTWISE
pointwise
MOL
Renormalized
bivariate
Frechet
Weibull
bilinear
metastable
priori
kj
mol
kcal
Hartree
eV
fs
amu
optimizers
proj
config
colvartools
mklib
newcv
pdbreader
NVE
SMAP
COSINUS
NOSTRETCH
TANH
tanh
qquad
molfile
picoseconds
orthorhombic
Giorgino's
curvilinear
txt
negativebias
myfes
myhisto
Quapp
Bonomi
EDSMOD
EABFMOD
Haochuan
github
MultiColvars
MultiColvar
MAXBACKUP
gz
kJ
nanometers
MCOLVAR
GRIDCALC
CONCOMP
MATRIXF
PRINTANALYSIS
GRIDANALYSIS
MTRANSFORMS
DCOLVAR
PRINTANALYSIS
UTILS
MCOLVARB
MCOLVARF
MFILTERS
mdatoms
allatoms
gcc
intel
travis
ci
Makefile
cmake
conf
sourceme
autoconf
mpic
mpicxx
mpi
CXX
icpc
MPICXX
Autoconf
macports
BLAS
LAPACK
lxdrfile
LIBS
ldl
numpy
cython
PYTHONPATH
runtime
CXXFLAGS
MacPorts
libmyxdrfile
libsearch
MacPorts
libplumed
LDFLAGS
lblas
llapack
rpath
lgfortran
Fortran
dsyevr
DF
MACOSXX
pathtovmdplugins
TCL
libKernel
sudo
relink
relinked
modulefile
namd
qespresso
fPIC
CPPFLAGS
linkers
libmolfile
usr
hoc
bindir
openMP
mpich
openblas
allmodules
subport
devel
libxdrfile
AVX
AIX
De
virtualenv
ld
cd
prelinking
lmpi
Abhishek
Acharya
DMPICH
lplumed
dl
progname
openmmp
erm
arse
autocompletion
autocomplete
dr
bashrc
env
executables
vimrc
PHelp
filetype
PPlus
PMinus
VIMPATH
modeline
Todo
toBeIncluded
plumedf
builddir
zo
zc
omnifunc
modulename
CUDA
OpenCL
parallelized
openmp
CACHELINE
asmjit
gitk
Macbook
ntomp
libmatheval
wikipedia
lugano
px
Lugano
Variational
cntrl
namelist
plumedfile
multisander
Multisander
DBUILD
DGMX
mdrun
Ralf
NPT
setMPIFIntercomm
setMPIFIntracomm
cmd
setStopFlag
GPUs
Giorgino
symlink
CMAP
getBias
BiasValue
plumednotmaintained
Hamiltonians
dfc
Abhi
argname
setmintozero
PLMD
CoordinationBase
GPL
BG
gettimeofday
LAMMPS
Swails
CFLAGS
cppcheck
lbz
LIBSUFFIX
bluegene
linux
molinfo
readdir
argnumber
Parrinello
Tiwary
vesselbase
MultiValue
lapack
DESTDIR
num
autotools
cpt
parallelization
UNNORMALIZED
AtomValuePack
CP
Ley
endline
crystallisation
performTask
crystallisation
VectorMultiColvar
ifdef
ActionWithVessel
NaN
IMD
Piaggi
Domanski
mpirun
checkpointing
componentWithDerivatives
setBias
setMDMassUnits
setMDChargeUnits
readInputLine
performCalcNoUpdate
doCheckPoint
const
Doxygen
NaNs
LatticeReduction
Massimiliano
Capitan
Portfiles
ccache
xdr
astyle
exitcode
DYLD
Culpo
plumedcheck
El
ASYNC
conda
symmetrize
Nava
Dama
Pazurikova
gettimeofdate
gettime
chrono
changelog
LDSO
LDSHARED
libplumedWrapper
pkgconfig
makefile
MPIEXEC
installcheck
SIMD
glycine
LDSHARED
PDB
SCEXP
MAXFACTOR
pABF
Marquardt
Hozzova
atan
ptr
cxx
namespace
Bsymbolic
PWD
rdynamic
vmd
solvated
endhidden
trieste
glycosidic
NVT
autocorrelation
monte
carlo
rangle
langle
Alanine
dipeptide
alanine
wdimer
mdp
vacuo
diala
von
Ramachandran
munster
equilibrate
ILDN
ala
binless
demuxed
demuxing
trajout
xvg
ALLBIAS
fulltraj
analine
discretize
cmyc
Cmyc
BRCA
edist
comdist
inhomogeneous
Arieh
Warshel
ActionWithArguments
MSD
rama
commmittor
gplt
SMD
Nucleophillic
HETATM
trjcat
rototranslations
GISMO
vmdrc
grompp
nsteps
plotme
Verlet
Jarzyinsi
integrators
JARZ
equilibrated
thermalization
sigmoid
TOPO
PTMetaD
WTE
configurational
BEMETA
METAGUI
metagui
Microstates
microstate
Gervasio
Laio
Raiteri
Micheletti
Marinelli
et
al
cv
Biarnes
Teq
Ttot
rotameric
microstates
Vendruscolo
Baftizadeh
Piana
Leu
WTBX
Kullback
Lieber
Symmetrized
Cossio
Proc
Acad
Comun
Comput
PLOS
Ile
VIL
zwitterionic
replex
NBIASEDCV
BIASEDCV
PLoS
Commun
gnp
TRP
Ubiquitin
Cavalli
JCTC
Weare
Boomsma
Lindorff
Ferkinghoff
Lectner
FCC
Ceriotti
Cheng
Simul
Trudu
Donadio
Quigley
Lett
judgement
cambridge
Chignolin
MPhil
WTMetaD
sb
di
CINECA
cineca
topolA
topolB
uncompressing
cmap
Topologies
topologies
nstlist
Julich
doxygen
Valgrind
polymorphism
biomolecular
isocommittor
pca
Crumlin
biomolecule
biomolecules
Francesco
NOHILLS
BIASXMD
STEERPLAN
UWALL
LWALL
WATERBRIDGE
RGYR
ELSTPOT
RDF
ADF
Bussi
Cunha
topolAwat
topolBwat
charmm
eef
impl
pbmetad
univocally
deconvolve
EGAAWAASS
jcouplings
ReweightDistance
ReweightBoth
gpi
sed
metad
targetdistribution
plotCoeffs
plotFes
plotTargetDistrib
BiasedDistribution
runRestart
coeff
Kolmogorov
Smirnov
airebo
scipy
statsmodels
AIREBO
newmovie
DynamicBonds
VDW
hyperdynamics
MANYBODY
RW
fullerene
fpt
ECDF
CDF
Tetsuya
Morishita
Naoki
Watanabe
LogMFD
AFED
LogPD
LOGMFDMOD
PIVMOD
logmfd
MFD
adiabatically
isokinetic
MFD
NHILLS
Fiskissimo
Simoes
Iglesias
Javi
Silvio
Pipolo
Fabio
ArrayFire
ESDW
CECAM
lyon
Wallclock
Ferrarotti
cunha
Paissoni
samplextc
SASDAB
SASDB
MacOS
runFinalJobs
MoleOrbitalHybridAnalyst
blas
endhtmlonly
htmlonly
diagonalize
diagonalized
diagonalization
vmdrc
lammps
equilibration
xdistances
homebrew
ffmpeg
gsl
lmp
equilibrating
equilibrates
trjconv
initio
inp
dinucleotide
monophosphate
minima
analytical
eigenvector
eigenvectors
paramagnetic
PDF
regex
nanotube
covalent
amino
filename
covariance
peptide
kinase
login
wildcard
wildcards
outliers
OUTLIERS
differentiable
ramping
radians
nucleotide
efficiencies
filenames
API
SVN
refactoring
Boltzmann
unweighted
parameterize
Jakub
Nicolaus
Torun
idlp
mdtraj
MDAnalysis
mda
vmdexec
MPa
kT
DLPOLY
Rydzewski
zcount
Multicanonical
Cauchy
OptimizerBias
Alin
jeffrey
tunable
dataset
multinomial
backported
Lixin
PabloPiaggi