pyani doesn´t works after installation

[zakisaati]

Summary:

The installation works well, but pyani command is not found

Description:

I installed pyani trying with conda install, with pip3 and from source, following steps detailed in the docs. It seems that everything is ok, but when I try to do "pyani --version" the system says "command not found".

When I print average_nucleotide_identity.py --version I obtain:
average_nucleotide_identity.py: pyani 0.2.9

So I guess that the problem is the installation of the pyani program itself.

I have python3.7 (and python 2.7) installed in my ubuntu system.

How could I solve it?

[widdowquinn]

Hi @zakisaati

Thank you for your interest in pyani. You're not the first to find this issue. The problem is that the instructions are slightly out of step with the version. Please see these other issue pages for help with resolving this:

• Con't get pyani commond #169
• pyani.py command not found #165

I apologise for the inconvenience.

L.

[zakisaati]

Thank you very much, the method works fine :)

[widdowquinn]

Brilliant! Please raise another issue if you have any issues or comments.