MethodError for connected_components

[yha]

Trying the "Getting started" example from the docs:

julia> using ManifoldLearning

julia> X, _ = ManifoldLearning.swiss_roll();

julia> M = fit(Isomap, X)
ERROR: MethodError: no method matching connected_components(::SimpleWeightedGraphs.SimpleWeightedGraph{Int64, Float64})
Closest candidates are:
  connected_components(::LightGraphs.AbstractGraph{T}) where T at C:\Users\sternlab\.julia\packages\LightGraphs\IgJif\src\connectivity.jl:100
Stacktrace:
 [1] largest_component(G::SimpleWeightedGraphs.SimpleWeightedGraph{Int64, Float64})
   @ ManifoldLearning C:\Users\sternlab\.julia\packages\ManifoldLearning\ocJhX\src\utils.jl:52
 [2] fit(::Type{Isomap}, X::Matrix{Float64}; k::Int64, maxoutdim::Int64, nntype::Type)
   @ ManifoldLearning C:\Users\sternlab\.julia\packages\ManifoldLearning\ocJhX\src\isomap.jl:54
 [3] fit(::Type{Isomap}, X::Matrix{Float64})
   @ ManifoldLearning C:\Users\sternlab\.julia\packages\ManifoldLearning\ocJhX\src\isomap.jl:52
 [4] top-level scope
   @ REPL[43]:1

This happens for all methods except DiffMap. Tested in julia 1.6.2 in a new temp environment.

(jl_wfx66s) pkg> status
      Status `C:\Users\sternlab\AppData\Local\Temp\jl_wfx66s\Project.toml`
  [06eb3307] ManifoldLearning v0.6.2

(jl_wfx66s) pkg> status -m
      Status `C:\Users\sternlab\AppData\Local\Temp\jl_wfx66s\Manifest.toml`
  [ec485272] ArnoldiMethod v0.1.0
  [7d9fca2a] Arpack v0.4.0
  [d360d2e6] ChainRulesCore v1.11.1
  [861a8166] Combinatorics v1.0.2
  [34da2185] Compat v3.40.0
  [9a962f9c] DataAPI v1.9.0
  [864edb3b] DataStructures v0.18.10
  [ffbed154] DocStringExtensions v0.8.6
  [86223c79] Graphs v1.4.1
  [d25df0c9] Inflate v0.1.2
  [3587e190] InverseFunctions v0.1.1
  [92d709cd] IrrationalConstants v0.1.1
  [093fc24a] LightGraphs v1.3.5
  [2ab3a3ac] LogExpFunctions v0.3.4
  [1914dd2f] MacroTools v0.5.9
  [06eb3307] ManifoldLearning v0.6.2
  [e1d29d7a] Missings v1.0.2
  [6f286f6a] MultivariateStats v0.8.0
  [bac558e1] OrderedCollections v1.4.1
  [699a6c99] SimpleTraits v0.9.4
  [47aef6b3] SimpleWeightedGraphs v1.2.0
  [a2af1166] SortingAlgorithms v1.0.1
  [90137ffa] StaticArrays v1.2.13
  [82ae8749] StatsAPI v1.0.0
  [2913bbd2] StatsBase v0.33.12
  [68821587] Arpack_jll v3.5.0+3
  [0dad84c5] ArgTools
  [56f22d72] Artifacts
  [2a0f44e3] Base64
  [ade2ca70] Dates
  [8bb1440f] DelimitedFiles
  [8ba89e20] Distributed
  [f43a241f] Downloads
  [b77e0a4c] InteractiveUtils
  [b27032c2] LibCURL
  [76f85450] LibGit2
  [8f399da3] Libdl
  [37e2e46d] LinearAlgebra
  [56ddb016] Logging
  [d6f4376e] Markdown
  [a63ad114] Mmap
  [ca575930] NetworkOptions
  [44cfe95a] Pkg
  [de0858da] Printf
  [3fa0cd96] REPL
  [9a3f8284] Random
  [ea8e919c] SHA
  [9e88b42a] Serialization
  [1a1011a3] SharedArrays
  [6462fe0b] Sockets
  [2f01184e] SparseArrays
  [10745b16] Statistics
  [fa267f1f] TOML
  [a4e569a6] Tar
  [8dfed614] Test
  [cf7118a7] UUIDs
  [4ec0a83e] Unicode
  [e66e0078] CompilerSupportLibraries_jll
  [deac9b47] LibCURL_jll
  [29816b5a] LibSSH2_jll
  [c8ffd9c3] MbedTLS_jll
  [14a3606d] MozillaCACerts_jll
  [4536629a] OpenBLAS_jll
  [83775a58] Zlib_jll
  [8e850ede] nghttp2_jll
  [3f19e933] p7zip_jll

[yha]

Workaround: ]add SimpleWeightedGraphs@1.1, which removes the Graphs.jl dependency.
I suppose SimpleWeightedGraphs should be capped at 1.1, or this package should transition from LightGraphs to Graphs.

[wildart]

Fixed in the new release.