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_hausdorff.pyx
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/
_hausdorff.pyx
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"""
Directed Hausdorff Code
.. versionadded:: 0.19.0
"""
#
# Copyright (C) Tyler Reddy, Richard Gowers, and Max Linke, 2016
#
# Distributed under the same BSD license as Scipy.
#
import numpy as np
cimport numpy as np
cimport cython
from libc.math cimport sqrt
__all__ = ['directed_hausdorff']
@cython.boundscheck(False)
def directed_hausdorff(double[:,::1] ar1, double[:,::1] ar2, seed=0):
cdef double cmax, cmin, d
cdef bint no_break_occurred
cdef int N1 = ar1.shape[0]
cdef int N2 = ar2.shape[0]
cdef int data_dims = ar1.shape[1]
cdef unsigned int i, j, k
cdef unsigned int i_store = 0, j_store = 0, i_ret = 0, j_ret = 0
cdef long[:] resort1, resort2
# shuffling the points in each array generally increases the likelihood of
# an advantageous break in the inner search loop and never decreases the
# performance of the algorithm
rng = np.random.RandomState(seed)
resort1 = np.arange(N1)
resort2 = np.arange(N2)
rng.shuffle(resort1)
rng.shuffle(resort2)
ar1 = np.asarray(ar1)[resort1]
ar2 = np.asarray(ar2)[resort2]
cmax = 0
for i in range(N1):
no_break_occurred = True
cmin = np.inf
for j in range(N2):
d = 0
# faster performance with square of distance
# avoid sqrt until very end
for k in range(data_dims):
d += (ar1[i, k] - ar2[j, k])**2
if d < cmax: # break out of `for j` loop
no_break_occurred = False
break
if d < cmin: # always true on first iteration of for-j loop
cmin = d
i_store = i
j_store = j
# always true on first iteration of for-j loop, after that only
# if d >= cmax
if cmin != np.inf and cmin >= cmax and no_break_occurred == True:
cmax = cmin
i_ret = i_store
j_ret = j_store
return (sqrt(cmax), resort1[i_ret], resort2[j_ret])