error in step 4GWAS_gapit.py

[Henry-Ding]

hi,
I used CG14.fa and Tumba.fa to get pan.fa and the fq file in your example ran out of 2Map_fq_to_Pan.py. I continued running 3Call_sv_to_genotype.py and got the following log message and output files:



I don't know if there is any problem with this log and the file I got. I then ran 4py based on this result, logging as follows:


How can I resolve this error?
looking forward to your answer.
best wishes,
henry