Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

ISSUE in using galaxy2cwl #12

Open
khaled196 opened this issue Nov 23, 2023 · 0 comments
Open

ISSUE in using galaxy2cwl #12

khaled196 opened this issue Nov 23, 2023 · 0 comments

Comments

@khaled196
Copy link

(.venv) (base) beacon@2023BH01:~/workflow$ galaxy2cwl Somatic-Variant-Discovery-from-WES-Data-Using-Control-FREEC.ga > somatic_corkflow.cwl
Traceback (most recent call last):
File "/home/beacon/.venv/bin/galaxy2cwl", line 8, in
sys.exit(main())
File "/home/beacon/.venv/lib/python3.8/site-packages/galaxy2cwl/get_cwl_interface.py", line 287, in main
cwl_out = process_format1_json(wf_dict)
File "/home/beacon/.venv/lib/python3.8/site-packages/galaxy2cwl/get_cwl_interface.py", line 78, in process_format1_json
source_output_name = sanitize_source(input_details['output_name'])
TypeError: list indices must be integers or slices, not str

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant