0.32.4

• add supplementary files used in dehumanising CLIMB uploads for ENA (Heron)
• add maxreadlen flag to bamstreamingduplicates in markdup_biobambam with default of 500

0.32.3

• force markdup_method:none (and primer_clip_method:no_clip) for untagged phiX and non-consented human split

0.32.2

• change prefix for SamHaplotag log files to include a trailing '.' (simplifies npg_irods archival)

0.32.1

• Fix top-level template for human split analysis

0.32.0

• add haplotag processing to stage2 analysis
• move C2A analysis from bam to cram output stream (to void possible malformed MD tag values)
• remove intermediate files from duplexseq processing
• flatten edges arrays (burst sub-arrays) as part of vtfp processing

0.31.0

• add C2A analysis to stage2 of standard pipelines

0.30.0

• add optional flags to bwa mem command for Hi-C library stage 2 analyses
• bam files (and md5, index files) produced using samtools and md5sum instead of bamrecompress

0.29.0

• added new Botseq/Duplex-Seq/Nano-Seq markdup_method

untagged-5cb9fced4531f399573c

update Changes for release 0.29.0

untagged-24670175a0a03499012f: Merge pull request #285 from wtsi-npg/devel

prep for release 0.29.0