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updated Exonerate link
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tk2 committed May 3, 2017
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Expand Up @@ -10,7 +10,7 @@ RetroSeq is a two phase process, the first being the read pair discovery phase w

Dependencies
-------------
RetroSeq makes use of the [bedtools package](http://code.google.com/p/bedtools/), [samtools](https://github.com/samtools/samtools), [Exonerate] (http://www.ebi.ac.uk/~guy/exonerate/), and various common unix tools such as sort and grep. RetroSeq will check if these are installed and available in the default path.
RetroSeq makes use of the [bedtools package](http://code.google.com/p/bedtools/), [samtools](https://github.com/samtools/samtools), [Exonerate](http://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate), and various common unix tools such as sort and grep. RetroSeq will check if these are installed and available in the default path.

NOTE: RetroSeq has been primarily tested on BAM files produced by [MAQ](http://maq.sourceforge.net/) and [BWA](http://bio-bwa.sourceforge.net/). There is no guarantee it will work on BAM files from other aligners.

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