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Unusual FarmCPU results #30

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strei102 opened this issue Dec 21, 2018 · 2 comments
Closed

Unusual FarmCPU results #30

strei102 opened this issue Dec 21, 2018 · 2 comments
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@strei102
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Hi,

I ran FarmCPU for multiple traits and I got quite unusual results. I attach a few manhattan plots to illustrate the issue.

Cheers,

Stephan

rectangular-manhattan trait4 farmcpu
rectangular-manhattan trait7 farmcpu
rectangular-manhattan trait10 farmcpu
rectangular-manhattan trait25 farmcpu
rectangular-manhattan trait30 farmcpu
rectangular-manhattan trait31 farmcpu
@hyacz
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hyacz commented Dec 22, 2018

Hi, Stephan

How many sample do you have? This seems to be due to too few samples or less stringent MAF quality control.

Cheers,

Haohao

@hyacz hyacz added the question label Dec 22, 2018
@hyacz hyacz closed this as completed Feb 25, 2019
@hyacz
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hyacz commented Feb 25, 2019

This issue is closed because it is no longer active.

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@hyacz @strei102