Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Total 1 individuals removed due to missings Error in GetElements.bm(x, i, j) : Illegal column index usage in extraction. Calls: MVP -> [ -> [ -> .local -> GetElements.bm #85

Open
kmosi0 opened this issue May 19, 2023 · 0 comments

Comments

@kmosi0
Copy link

kmosi0 commented May 19, 2023

Total 1 individuals removed due to missings
Error in GetElements.bm(x, i, j) :
Illegal column index usage in extraction.

my code is belong:


 imMVP <- MVP(
   phe=phenotype[, c(1, 2)],
   geno=genotype,
   map=map,
   K=Kinship,
   CV.GLM=Covariates_PC,  ##if you have additional covariates, please keep there open.
   CV.MLM=Covariates_PC,
   CV.FarmCPU=Covariates_PC,
   priority="speed",   ##for Kinship construction
   ncpus=10,
   vc.method="BRENT",  ##only works for MLM
   maxLoop=10,
   method.bin="static",   ## "FaST-LMM", "static" (#only works for FarmCPU)
   threshold=0.05,
   method=c("GLM", "MLM", "FarmCPU"),
   file.output=c("pmap", "pmap.signal", "plot", "log")
 )

Thank you for help!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant