Use of uninitialized value $cisout[1] in join or string at /opt/bsa/bsaindex.pl line 377, <$fin> line 92.

[fan040]

This is my command line, I don't know what's wrong, I just want to count the values of snpindex greater than 0.8, and I want to graph them.

sbatch -p cpu -n 4 --nodes 1 --job-name cisim -e cisim.err -o cisim.out --wrap "apptainer run /cluster/home/baishenglong/softwares/apptainer_hub/bsa_2023.sif perl /opt/bsa/simulation_v2.pl -k bsa -od result -pt f2 -sd od -s2 21 -md 5 -xd 1000 -mi 0.8 -rb /opt/conda/bin/Rscript"

sbatch -p cpu -n 4 --nodes 1 --job-name mut -e mut.err -o mut.out --wrap "apptainer run /cluster/home/baishenglong/softwares/apptainer_hub/bsa_2023.sif perl /opt/bsa/bsaindex.pl -v /cluster/home/fanrong/work_lei/BSA/02_ZS/03_merge_GVCF/merge.snp_idl.2allele.resume.vcf.gz -k bsa -od result -b2 D_ZS -b1 D_AK58 -p1 D_AK58 -pt f2 -md 5 -xd 1000 -pd 5 -mt all -sf ./result/bsa.cisim.xls -id F -mi 0.8"