Data processing pipeline for the paper: Ancient DNA reveals genetic admixture in China during tiger evolution https://www.nature.com/articles/s41559-023-02185-8
This repo contains our data analysis pipeline. If you have questions, please open an issue.
1. Raw data mapping
2. Quality control/Filtering
3. PCA_ADMIXTURE
4. D-stat_AdmixtureGraph
5. BEAST_PSMC_GPhoCS
6. Maxent
7. Genotypelikelihood_based_replications