-
Notifications
You must be signed in to change notification settings - Fork 0
/
NAMESPACE
67 lines (66 loc) · 1.82 KB
/
NAMESPACE
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
# Generated by roxygen2: do not edit by hand
export(cts_to_vsd)
export(filter_mut_table)
export(get_top_genes)
export(htseq_to_mtx)
export(log2ratio_to_segment)
export(mtx_name_match)
export(mut_add_column)
export(plot_deseq_gsea)
export(plot_deseq_gsea_list)
export(plot_deseq_ma)
export(plot_deseq_volcano)
export(plot_gene_boxplot)
export(plot_heatmap_vsd)
export(plot_pca_vsd)
export(plot_sample_gene_mtx)
export(res_to_gsea)
export(reset_xmcutil_opts)
export(segment_to_cnv)
export(test_cnv)
export(xmc_constants)
importFrom(ComplexHeatmap,Heatmap)
importFrom(RColorBrewer,brewer.pal)
importFrom(circlize,colorRamp2)
importFrom(dplyr,arrange)
importFrom(dplyr,filter)
importFrom(dplyr,mutate)
importFrom(dplyr,pull)
importFrom(dplyr,select)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_brewer)
importFrom(ggplot2,scale_color_distiller)
importFrom(ggplot2,scale_color_gradient2)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_brewer)
importFrom(ggplot2,scale_fill_gradient2)
importFrom(ggplot2,scale_shape_manual)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(grid,gpar)
importFrom(grid,unit)
importFrom(magrittr,"%<>%")
importFrom(magrittr,"%>%")
importFrom(purrr,map_chr)
importFrom(rlang,.data)
importFrom(rlang,sym)
importFrom(stats,dist)
importFrom(stats,quantile)
importFrom(stats,reorder)
importFrom(stringr,str_remove)
importFrom(stringr,str_split)
importFrom(tibble,add_column)
importFrom(tibble,as_tibble)
importFrom(tibble,rownames_to_column)
importFrom(tidyr,pivot_wider)
importFrom(utils,head)
importFrom(utils,read.table)