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I think I still encounter an issue that is similar to issue#32
i.e., I did not get the psites_number table in the hdf5 file.
group name otype dclass dim
0 / p_sites H5I_DATASET VLEN 46826
1 / transcript_ids H5I_DATASET STRING 46826
Also the dimension of the p_sites table seems to be wrong.
Otherwise the code ran okay and generated other files.
This job is running on skl-119 on Wed May 17 23:21:46 EDT 2023
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Loading transcripts.pickle ...
Reading bam file: /mnt/home/larrywu/CTRL_arabidopsis/data/RiboCode_STAR/ribo_mapped/D1//star_D1_Aligned.toTranscriptome.out.bam......
Finished reading bam file!
Any suggestions for how to deal with this issue? Thanks!
The text was updated successfully, but these errors were encountered:
I think I still encounter an issue that is similar to issue#32
i.e., I did not get the psites_number table in the hdf5 file.
Also the dimension of the p_sites table seems to be wrong.
Otherwise the code ran okay and generated other files.
Any suggestions for how to deal with this issue? Thanks!
The text was updated successfully, but these errors were encountered: