Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

New exprs function in dplyr messes up the normalization.zscore function #6

Open
agreco92 opened this issue Jun 4, 2018 · 1 comment

Comments

@agreco92
Copy link

agreco92 commented Jun 4, 2018

The dplyr package recently defined a new exprs function that masks the Biobase one, messing up the normalization step in the SINCERA pipeline.

The workaround is to manually specify
exprs=Biobase::exprs

in the code, but including the specification in the package may save some frustrating debugging to users :)

Issue with workaround: https://support.bioconductor.org/p/109128/

@minzheguo
Copy link
Collaborator

Hi @agreco92, sorry for replying late. Thanks for the comment. I updated the code to change "exprs" calling to "Biobase::exprs". Thank you!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants