Run_sspace-longread is an optimized edition of SSPACE-LongRead. We use the software mecat and minimap2 to align the raw Pacbio reads to the assembled contigs or scaffold insteading of blasr. Both of them have a higher efficiency than the software blasr, which is nearly 10 times faster.
Run_sspace-longread is free for academic and non-profit use (see :ref:`License <license>`).
对于Run_sspace-longread, 采取mecat和Minimap2替换的版本, 可以下其中文文档 Chinese document
Run_sspace-longread pipeline. The workflow using long read sequence information to construct longer scaffolds
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.. toctree:: :hidden: :caption: Getting started :maxdepth: 3 install quickstart example result
.. toctree:: :hidden: :caption: Reference :maxdepth: 2 reference
.. toctree:: :hidden: :caption: Release note :maxdepth: 2 release
.. toctree:: :hidden: :caption: License :maxdepth: 2 license