/
all_fea_ranking
190 lines (190 loc) · 4.21 KB
/
all_fea_ranking
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
#The feature ranking based on Random forest feature selection, and the second column is feature name, more detail please refer to manuscript.
#ranking feature_name score
1 cons_variance 0.040354
2 cons_mean 0.023544
3 cons_freq_8_consecutive_0.3 0.018908
4 cons_max 0.016960
5 cons_freq_greater_0.9 0.016438
6 GTAG 0.015984
7 cons_freq_5_consecutive_0.3 0.014755
8 length 0.014648
9 cons_freq_smaller_0.9 0.014525
10 cons_freq_greater_0.6 0.014367
11 graph_21 0.013846
12 cons_freq_4_consecutive_0.3 0.013336
13 cons_freq_7_consecutive_0.3 0.013292
14 cons_freq_greater_0.3 0.013155
15 graph_89 0.012730
16 freq_CAA 0.010550
17 cons_freq_6_consecutive_0.3 0.010445
18 graph_8 0.009540
19 ORF prop 0.008795
20 graph_60 0.008105
21 graph_20 0.007916
22 graph_78 0.007641
23 graph_70 0.007436
24 graph_42 0.007335
25 graph_92 0.007216
26 ORF length 0.006654
27 freq_AGT 0.006539
28 freq_TTG 0.006280
29 graph_14 0.006258
30 graph_5 0.006251
31 freq_ACA 0.006231
32 snp density 0.006205
33 graph_18 0.006179
34 graph_83 0.005946
35 graph_73 0.005838
36 graph_66 0.005777
37 graph_65 0.005670
38 graph_25 0.005636
39 graph_35 0.005544
40 graph_100 0.005522
41 graph_97 0.005365
42 freq_TGT 0.005363
43 graph_55 0.005324
44 graph_13 0.005292
45 freq_GTG 0.005255
46 graph_75 0.005250
47 graph_58 0.005246
48 graph_30 0.005243
49 graph_1 0.005225
50 graph_19 0.005106
51 graph_45 0.005104
52 graph_33 0.005078
53 graph_6 0.005059
54 graph_93 0.005051
55 graph_85 0.005031
56 graph_99 0.005019
57 graph_7 0.005009
58 ALU 0.004997
59 graph_69 0.004986
60 graph_77 0.004962
61 graph_61 0.004932
62 graph_95 0.004907
63 graph_80 0.004900
64 graph_51 0.004813
65 graph_22 0.004782
66 graph_71 0.004778
67 graph_39 0.004751
68 graph_88 0.004702
69 graph_79 0.004698
70 freq_AAA 0.004689
71 graph_17 0.004672
72 graph_15 0.004670
73 graph_86 0.004668
74 graph_74 0.004667
75 graph_72 0.004650
76 graph_98 0.004582
77 graph_29 0.004570
78 graph_52 0.004557
79 graph_32 0.004549
80 graph_81 0.004530
81 graph_96 0.004520
82 graph_12 0.004462
83 graph_11 0.004453
84 graph_49 0.004402
85 freq_TGG 0.004401
86 graph_34 0.004400
87 graph_28 0.004400
88 graph_44 0.004398
89 graph_76 0.004397
90 graph_38 0.004392
91 graph_36 0.004380
92 graph_59 0.004358
93 graph_87 0.004328
94 graph_24 0.004326
95 graph_68 0.004298
96 graph_2 0.004284
97 graph_53 0.004267
98 graph_27 0.004259
99 graph_10 0.004227
100 graph_3 0.004221
101 graph_31 0.004206
102 graph_94 0.004201
103 freq_CTG 0.004193
104 graph_26 0.004190
105 graph_64 0.004159
106 graph_84 0.004157
107 graph_101 0.004146
108 graph_9 0.004146
109 graph_40 0.004137
110 graph_37 0.004116
111 graph_56 0.004092
112 graph_23 0.004092
113 graph_43 0.004083
114 graph_48 0.004067
115 freq_GTT 0.004056
116 graph_91 0.004006
117 graph_82 0.003981
118 graph_50 0.003975
119 graph_57 0.003964
120 graph_90 0.003964
121 graph_4 0.003926
122 graph_46 0.003916
123 graph_54 0.003907
124 GT 0.003896
125 graph_47 0.003885
126 graph_67 0.003877
127 graph_16 0.003877
128 graph_41 0.003816
129 graph_63 0.003762
130 freq_AAT 0.003622
131 GC 0.003620
132 freq_TAG 0.003538
133 tandem 0.003503
134 freq_GGG 0.003422
135 freq_GTA 0.003376
136 freq_AGG 0.003357
137 freq_TGA 0.003275
138 freq_AAC 0.003235
139 freq_CAG 0.003233
140 freq_TAA 0.003225
141 freq_TCT 0.003185
142 freq_CGG 0.003168
143 freq_CCT 0.003165
144 freq_AGA 0.003153
145 freq_GAA 0.003144
146 freq_TTC 0.003132
147 graph_62 0.003070
148 freq_AAG 0.003036
149 freq_TTT 0.003033
150 freq_GCG 0.003019
151 freq_CGC 0.002999
152 freq_TCC 0.002997
153 freq_CAT 0.002987
154 freq_TCA 0.002942
155 freq_CTT 0.002935
156 freq_GAG 0.002932
157 freq_TTA 0.002921
158 freq_GGA 0.002899
159 freq_CCA 0.002882
160 freq_TGC 0.002871
161 freq_GCA 0.002820
162 freq_GGT 0.002816
163 freq_ATA 0.002811
164 freq_CAC 0.002751
165 freq_CCG 0.002728
166 freq_ATG 0.002719
167 freq_CTC 0.002718
168 freq_ATT 0.002678
169 freq_ATC 0.002676
170 freq_GCC 0.002672
171 freq_GGC 0.002671
172 freq_TAT 0.002633
173 freq_AGC 0.002616
174 freq_GAT 0.002597
175 freq_TAC 0.002566
176 freq_GCT 0.002549
177 freq_ACC 0.002544
178 freq_CTA 0.002439
179 freq_ACT 0.002432
180 freq_GAC 0.002393
181 freq_GTC 0.002363
182 freq_CCC 0.002139
183 freq_CGA 0.002022
184 freq_TCG 0.001988
185 freq_CGT 0.001912
186 freq_ACG 0.001886
187 AGGT 0.001822
188 AG 0.001812