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setup.py
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setup.py
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from setuptools import setup
import re
import os
with open('{}/README.md'.format(os.path.split(os.path.abspath(__file__))[0]), 'r') as inf:
long_description = inf.read()
with open('{}/src/r2g/__init__.py'.format(os.path.split(os.path.abspath(__file__))[0]), 'r') as inf:
version = re.findall(r'__version__ = "(.+)"', inf.read())[0]
setup(
name='r2g',
version=version,
license="MIT",
url='https://yangwu91.github.io/r2g/',
author='Yang Wu',
author_email='wuyang@drwu.ga',
maintainer="Yang Wu",
maintainer_email="wuyang@drwu.ga",
description='A homology-based, computationally lightweight pipeline for '
'discovering genes in the absence of an assembly',
long_description=long_description,
long_description_content_type="text/markdown",
python_requires='>=3.6',
scripts=['src/scripts/r2g'],
py_modules=['r2g.errors', ],
packages=[
"r2g",
"r2g.utils",
"r2g.local",
"r2g.online"
],
package_dir={"": "src"},
package_data={'r2g': ['*.json', ]},
classifiers=[
"Development Status :: 5 - Production/Stable",
"Environment :: Console",
"Intended Audience :: Science/Research",
# Technically the license is not OSI approved,
# but almost there, so might put:
"License :: OSI Approved :: MIT License",
"Natural Language :: English",
"Operating System :: OS Independent",
"Programming Language :: Python :: 3.6",
"Programming Language :: Python :: 3.7",
"Programming Language :: Python :: 3.8",
"Topic :: Scientific/Engineering :: Bio-Informatics"
],
install_requires=["requests~=2.24.0", "selenium~=3.141.0"],
extras_require={
'gui': ["r2g_gui", "PyQt5~=5.12.3"],
'test': ["pytest", "pytest-cov", "codecov"],
},
)