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Can you please let me know how to return the UMAP model after running RunBBKNN?
This would substantially facilitate reference mapping based on an a BBKNN-generated reference.
I was trying to integrate this into the Seurat workflow but I had no success so far.
Something like this (return.model parameter)
seu <- RunUMAP(seu, reduction = "harmony", dims = 1:50, reduction.name = "umap.harmony", return.model = TRUE, umap.method = 'uwot')
Thank you!
The text was updated successfully, but these errors were encountered:
Hello, thanks for developing this package!
Can you please let me know how to return the UMAP model after running RunBBKNN?
This would substantially facilitate reference mapping based on an a BBKNN-generated reference.
I was trying to integrate this into the Seurat workflow but I had no success so far.
Something like this (return.model parameter)
seu <- RunUMAP(seu, reduction = "harmony", dims = 1:50, reduction.name = "umap.harmony", return.model = TRUE, umap.method = 'uwot')
Thank you!
The text was updated successfully, but these errors were encountered: