Create a new Anaconda environment ...
(base) yekyaw.thu@gpu:~$ conda create -n vit python=3.8
Collecting package metadata (current_repodata.json): done
Solving environment: done
==> WARNING: A newer version of conda exists. <==
current version: 4.8.2
latest version: 22.9.0
Please update conda by running
$ conda update -n base -c defaults conda
## Package Plan ##
environment location: /home/yekyaw.thu/.conda/envs/vit
added / updated specs:
- python=3.8
The following packages will be downloaded:
package | build
---------------------------|-----------------
ca-certificates-2022.10.11 | h06a4308_0 124 KB
certifi-2022.9.24 | py38h06a4308_0 154 KB
libffi-3.4.2 | h295c915_4 124 KB
openssl-1.1.1s | h7f8727e_0 3.6 MB
pip-22.2.2 | py38h06a4308_0 2.3 MB
python-3.8.15 | h3fd9d12_0 20.1 MB
setuptools-65.5.0 | py38h06a4308_0 1.1 MB
------------------------------------------------------------
Total: 27.5 MB
The following NEW packages will be INSTALLED:
_libgcc_mutex pkgs/main/linux-64::_libgcc_mutex-0.1-main
_openmp_mutex pkgs/main/linux-64::_openmp_mutex-5.1-1_gnu
ca-certificates pkgs/main/linux-64::ca-certificates-2022.10.11-h06a4308_0
certifi pkgs/main/linux-64::certifi-2022.9.24-py38h06a4308_0
ld_impl_linux-64 pkgs/main/linux-64::ld_impl_linux-64-2.38-h1181459_1
libffi pkgs/main/linux-64::libffi-3.4.2-h295c915_4
libgcc-ng pkgs/main/linux-64::libgcc-ng-11.2.0-h1234567_1
libgomp pkgs/main/linux-64::libgomp-11.2.0-h1234567_1
libstdcxx-ng pkgs/main/linux-64::libstdcxx-ng-11.2.0-h1234567_1
ncurses pkgs/main/linux-64::ncurses-6.3-h5eee18b_3
openssl pkgs/main/linux-64::openssl-1.1.1s-h7f8727e_0
pip pkgs/main/linux-64::pip-22.2.2-py38h06a4308_0
python pkgs/main/linux-64::python-3.8.15-h3fd9d12_0
readline pkgs/main/linux-64::readline-8.2-h5eee18b_0
setuptools pkgs/main/linux-64::setuptools-65.5.0-py38h06a4308_0
sqlite pkgs/main/linux-64::sqlite-3.39.3-h5082296_0
tk pkgs/main/linux-64::tk-8.6.12-h1ccaba5_0
wheel pkgs/main/noarch::wheel-0.37.1-pyhd3eb1b0_0
xz pkgs/main/linux-64::xz-5.2.6-h5eee18b_0
zlib pkgs/main/linux-64::zlib-1.2.13-h5eee18b_0
Proceed ([y]/n)? y
Downloading and Extracting Packages
certifi-2022.9.24 | 154 KB | ################################################################################### | 100%
pip-22.2.2 | 2.3 MB | ################################################################################### | 100%
openssl-1.1.1s | 3.6 MB | ################################################################################### | 100%
ca-certificates-2022 | 124 KB | ################################################################################### | 100%
setuptools-65.5.0 | 1.1 MB | ################################################################################### | 100%
python-3.8.15 | 20.1 MB | ################################################################################### | 100%
libffi-3.4.2 | 124 KB | ################################################################################### | 100%
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
#
# To activate this environment, use
#
# $ conda activate vit
#
# To deactivate an active environment, use
#
# $ conda deactivate
(base) yekyaw.thu@gpu:~$
Entering into the new enviornment named "vit":
(base) yekyaw.thu@gpu:~$ conda activate vit
(vit) yekyaw.thu@gpu:~$
Install Jupyter Notebook on GPU server:
(vit) yekyaw.thu@gpu:~$ conda install jupyter
Collecting package metadata (current_repodata.json): done
Solving environment: |
The environment is inconsistent, please check the package plan carefully
The following packages are causing the inconsistency:
- defaults/linux-64::tk==8.6.12=h1ccaba5_0
- defaults/linux-64::ncurses==6.3=h5eee18b_3
- defaults/linux-64::setuptools==65.5.0=py38h06a4308_0
- defaults/linux-64::xz==5.2.6=h5eee18b_0
- defaults/linux-64::libffi==3.4.2=h295c915_4
- defaults/linux-64::python==3.8.15=h3fd9d12_0
- defaults/linux-64::pip==22.2.2=py38h06a4308_0
- defaults/linux-64::zlib==1.2.13=h5eee18b_0
- defaults/linux-64::libgcc-ng==11.2.0=h1234567_1
- defaults/linux-64::openssl==1.1.1s=h7f8727e_0
- defaults/linux-64::readline==8.2=h5eee18b_0
- defaults/linux-64::sqlite==3.39.3=h5082296_0
- defaults/linux-64::certifi==2022.9.24=py38h06a4308_0
- defaults/linux-64::libstdcxx-ng==11.2.0=h1234567_1
- defaults/noarch::wheel==0.37.1=pyhd3eb1b0_0
done
==> WARNING: A newer version of conda exists. <==
current version: 4.8.2
latest version: 22.9.0
Please update conda by running
$ conda update -n base -c defaults conda
## Package Plan ##
environment location: /home/yekyaw.thu/.conda/envs/vit
added / updated specs:
- jupyter
The following packages will be downloaded:
package | build
---------------------------|-----------------
anyio-3.5.0 | py38h06a4308_0 165 KB
argon2-cffi-21.3.0 | pyhd3eb1b0_0 15 KB
argon2-cffi-bindings-21.2.0| py38h7f8727e_0 33 KB
asttokens-2.0.5 | pyhd3eb1b0_0 20 KB
attrs-21.4.0 | pyhd3eb1b0_0 51 KB
babel-2.9.1 | pyhd3eb1b0_0 5.5 MB
backcall-0.2.0 | pyhd3eb1b0_0 13 KB
beautifulsoup4-4.11.1 | py38h06a4308_0 185 KB
bleach-4.1.0 | pyhd3eb1b0_0 123 KB
brotlipy-0.7.0 |py38h27cfd23_1003 323 KB
cffi-1.15.1 | py38h74dc2b5_0 228 KB
charset-normalizer-2.0.4 | pyhd3eb1b0_0 35 KB
cryptography-38.0.1 | py38h9ce1e76_0 1.3 MB
dbus-1.13.18 | hb2f20db_0 504 KB
debugpy-1.5.1 | py38h295c915_0 1.7 MB
decorator-5.1.1 | pyhd3eb1b0_0 12 KB
defusedxml-0.7.1 | pyhd3eb1b0_0 23 KB
entrypoints-0.4 | py38h06a4308_0 16 KB
executing-0.8.3 | pyhd3eb1b0_0 18 KB
expat-2.4.9 | h6a678d5_0 156 KB
fontconfig-2.13.1 | hef1e5e3_1 260 KB
freetype-2.12.1 | h4a9f257_0 626 KB
giflib-5.2.1 | h7b6447c_0 78 KB
glib-2.69.1 | h4ff587b_1 1.7 MB
gst-plugins-base-1.14.0 | h8213a91_2 4.9 MB
gstreamer-1.14.0 | h28cd5cc_2 3.2 MB
icu-58.2 | he6710b0_3 10.5 MB
idna-3.4 | py38h06a4308_0 93 KB
importlib-metadata-4.11.3 | py38h06a4308_0 40 KB
importlib_resources-5.2.0 | pyhd3eb1b0_1 21 KB
ipykernel-6.15.2 | py38h06a4308_0 190 KB
ipython-8.6.0 | py38h06a4308_0 1.0 MB
ipython_genutils-0.2.0 | pyhd3eb1b0_1 27 KB
ipywidgets-7.6.5 | pyhd3eb1b0_1 105 KB
jedi-0.18.1 | py38h06a4308_1 982 KB
jinja2-3.1.2 | py38h06a4308_0 211 KB
jpeg-9e | h7f8727e_0 240 KB
json5-0.9.6 | pyhd3eb1b0_0 21 KB
jsonschema-4.16.0 | py38h06a4308_0 128 KB
jupyter-1.0.0 | py38h06a4308_8 7 KB
jupyter_client-7.3.5 | py38h06a4308_0 192 KB
jupyter_console-6.4.3 | pyhd3eb1b0_0 23 KB
jupyter_core-4.11.2 | py38h06a4308_0 80 KB
jupyter_server-1.18.1 | py38h06a4308_0 356 KB
jupyterlab-3.4.4 | py38h06a4308_0 3.7 MB
jupyterlab_pygments-0.1.2 | py_0 8 KB
jupyterlab_server-2.15.2 | py38h06a4308_0 75 KB
jupyterlab_widgets-1.0.0 | pyhd3eb1b0_1 109 KB
krb5-1.19.2 | hac12032_0 1.2 MB
lerc-3.0 | h295c915_0 196 KB
libclang-10.0.1 |default_hb85057a_2 10.8 MB
libdeflate-1.8 | h7f8727e_5 51 KB
libedit-3.1.20210910 | h7f8727e_0 166 KB
libevent-2.1.12 | h8f2d780_0 425 KB
libllvm10-10.0.1 | hbcb73fb_5 22.1 MB
libpq-12.9 | h16c4e8d_3 2.1 MB
libsodium-1.0.18 | h7b6447c_0 244 KB
libtiff-4.4.0 | hecacb30_2 526 KB
libuuid-1.41.5 | h5eee18b_0 27 KB
libwebp-1.2.4 | h11a3e52_0 79 KB
libwebp-base-1.2.4 | h5eee18b_0 347 KB
libxcb-1.15 | h7f8727e_0 505 KB
libxkbcommon-1.0.1 | hfa300c1_0 483 KB
libxml2-2.9.14 | h74e7548_0 718 KB
libxslt-1.1.35 | h4e12654_0 453 KB
lxml-4.9.1 | py38h1edc446_0 1.3 MB
lz4-c-1.9.3 | h295c915_1 185 KB
markupsafe-2.1.1 | py38h7f8727e_0 21 KB
matplotlib-inline-0.1.6 | py38h06a4308_0 16 KB
mistune-0.8.4 |py38h7b6447c_1000 55 KB
nbclassic-0.4.8 | py38h06a4308_0 5.8 MB
nbclient-0.5.13 | py38h06a4308_0 91 KB
nbconvert-6.5.4 | py38h06a4308_0 513 KB
nbformat-5.5.0 | py38h06a4308_0 128 KB
nest-asyncio-1.5.5 | py38h06a4308_0 16 KB
notebook-6.5.2 | py38h06a4308_0 510 KB
notebook-shim-0.2.2 | py38h06a4308_0 22 KB
nspr-4.33 | h295c915_0 222 KB
nss-3.74 | h0370c37_0 1.9 MB
packaging-21.3 | pyhd3eb1b0_0 36 KB
pandocfilters-1.5.0 | pyhd3eb1b0_0 11 KB
parso-0.8.3 | pyhd3eb1b0_0 70 KB
pcre-8.45 | h295c915_0 207 KB
pexpect-4.8.0 | pyhd3eb1b0_3 53 KB
pickleshare-0.7.5 | pyhd3eb1b0_1003 13 KB
pkgutil-resolve-name-1.3.10| py38h06a4308_0 9 KB
ply-3.11 | py38_0 81 KB
prometheus_client-0.14.1 | py38h06a4308_0 90 KB
prompt-toolkit-3.0.20 | pyhd3eb1b0_0 259 KB
prompt_toolkit-3.0.20 | hd3eb1b0_0 12 KB
psutil-5.9.0 | py38h5eee18b_0 330 KB
ptyprocess-0.7.0 | pyhd3eb1b0_2 17 KB
pure_eval-0.2.2 | pyhd3eb1b0_0 14 KB
pycparser-2.21 | pyhd3eb1b0_0 94 KB
pygments-2.11.2 | pyhd3eb1b0_0 759 KB
pyopenssl-22.0.0 | pyhd3eb1b0_0 50 KB
pyparsing-3.0.9 | py38h06a4308_0 152 KB
pyqt-5.15.7 | py38h6a678d5_1 5.1 MB
pyqt5-sip-12.11.0 | py38h6a678d5_1 87 KB
pyrsistent-0.18.0 | py38heee7806_0 94 KB
pysocks-1.7.1 | py38h06a4308_0 31 KB
python-3.8.13 | haa1d7c7_1 20.2 MB
python-dateutil-2.8.2 | pyhd3eb1b0_0 233 KB
python-fastjsonschema-2.16.2| py38h06a4308_0 230 KB
pytz-2022.1 | py38h06a4308_0 196 KB
pyzmq-23.2.0 | py38h6a678d5_0 448 KB
qt-main-5.15.2 | h327a75a_7 45.1 MB
qt-webengine-5.15.9 | hd2b0992_4 47.1 MB
qtconsole-5.3.2 | py38h06a4308_0 176 KB
qtpy-2.2.0 | py38h06a4308_0 84 KB
qtwebkit-5.212 | h4eab89a_4 14.3 MB
requests-2.28.1 | py38h06a4308_0 92 KB
send2trash-1.8.0 | pyhd3eb1b0_1 19 KB
sip-6.6.2 | py38h6a678d5_0 425 KB
six-1.16.0 | pyhd3eb1b0_1 18 KB
sniffio-1.2.0 | py38h06a4308_1 15 KB
soupsieve-2.3.2.post1 | py38h06a4308_0 65 KB
stack_data-0.2.0 | pyhd3eb1b0_0 22 KB
terminado-0.13.1 | py38h06a4308_0 30 KB
tinycss2-1.2.1 | py38h06a4308_0 40 KB
toml-0.10.2 | pyhd3eb1b0_0 20 KB
tornado-6.2 | py38h5eee18b_0 590 KB
traitlets-5.1.1 | pyhd3eb1b0_0 84 KB
typing-extensions-4.3.0 | py38h06a4308_0 9 KB
typing_extensions-4.3.0 | py38h06a4308_0 42 KB
urllib3-1.26.12 | py38h06a4308_0 182 KB
wcwidth-0.2.5 | pyhd3eb1b0_0 26 KB
webencodings-0.5.1 | py38_1 20 KB
websocket-client-0.58.0 | py38h06a4308_4 66 KB
widgetsnbextension-3.5.2 | py38h06a4308_0 651 KB
zeromq-4.3.4 | h2531618_0 331 KB
zipp-3.8.0 | py38h06a4308_0 15 KB
zstd-1.5.2 | ha4553b6_0 488 KB
------------------------------------------------------------
Total: 228.9 MB
The following NEW packages will be INSTALLED:
anyio pkgs/main/linux-64::anyio-3.5.0-py38h06a4308_0
argon2-cffi pkgs/main/noarch::argon2-cffi-21.3.0-pyhd3eb1b0_0
argon2-cffi-bindi~ pkgs/main/linux-64::argon2-cffi-bindings-21.2.0-py38h7f8727e_0
asttokens pkgs/main/noarch::asttokens-2.0.5-pyhd3eb1b0_0
attrs pkgs/main/noarch::attrs-21.4.0-pyhd3eb1b0_0
babel pkgs/main/noarch::babel-2.9.1-pyhd3eb1b0_0
backcall pkgs/main/noarch::backcall-0.2.0-pyhd3eb1b0_0
beautifulsoup4 pkgs/main/linux-64::beautifulsoup4-4.11.1-py38h06a4308_0
bleach pkgs/main/noarch::bleach-4.1.0-pyhd3eb1b0_0
brotlipy pkgs/main/linux-64::brotlipy-0.7.0-py38h27cfd23_1003
cffi pkgs/main/linux-64::cffi-1.15.1-py38h74dc2b5_0
charset-normalizer pkgs/main/noarch::charset-normalizer-2.0.4-pyhd3eb1b0_0
cryptography pkgs/main/linux-64::cryptography-38.0.1-py38h9ce1e76_0
dbus pkgs/main/linux-64::dbus-1.13.18-hb2f20db_0
debugpy pkgs/main/linux-64::debugpy-1.5.1-py38h295c915_0
decorator pkgs/main/noarch::decorator-5.1.1-pyhd3eb1b0_0
defusedxml pkgs/main/noarch::defusedxml-0.7.1-pyhd3eb1b0_0
entrypoints pkgs/main/linux-64::entrypoints-0.4-py38h06a4308_0
executing pkgs/main/noarch::executing-0.8.3-pyhd3eb1b0_0
expat pkgs/main/linux-64::expat-2.4.9-h6a678d5_0
fontconfig pkgs/main/linux-64::fontconfig-2.13.1-hef1e5e3_1
freetype pkgs/main/linux-64::freetype-2.12.1-h4a9f257_0
giflib pkgs/main/linux-64::giflib-5.2.1-h7b6447c_0
glib pkgs/main/linux-64::glib-2.69.1-h4ff587b_1
gst-plugins-base pkgs/main/linux-64::gst-plugins-base-1.14.0-h8213a91_2
gstreamer pkgs/main/linux-64::gstreamer-1.14.0-h28cd5cc_2
icu pkgs/main/linux-64::icu-58.2-he6710b0_3
idna pkgs/main/linux-64::idna-3.4-py38h06a4308_0
importlib-metadata pkgs/main/linux-64::importlib-metadata-4.11.3-py38h06a4308_0
importlib_resourc~ pkgs/main/noarch::importlib_resources-5.2.0-pyhd3eb1b0_1
ipykernel pkgs/main/linux-64::ipykernel-6.15.2-py38h06a4308_0
ipython pkgs/main/linux-64::ipython-8.6.0-py38h06a4308_0
ipython_genutils pkgs/main/noarch::ipython_genutils-0.2.0-pyhd3eb1b0_1
ipywidgets pkgs/main/noarch::ipywidgets-7.6.5-pyhd3eb1b0_1
jedi pkgs/main/linux-64::jedi-0.18.1-py38h06a4308_1
jinja2 pkgs/main/linux-64::jinja2-3.1.2-py38h06a4308_0
jpeg pkgs/main/linux-64::jpeg-9e-h7f8727e_0
json5 pkgs/main/noarch::json5-0.9.6-pyhd3eb1b0_0
jsonschema pkgs/main/linux-64::jsonschema-4.16.0-py38h06a4308_0
jupyter pkgs/main/linux-64::jupyter-1.0.0-py38h06a4308_8
jupyter_client pkgs/main/linux-64::jupyter_client-7.3.5-py38h06a4308_0
jupyter_console pkgs/main/noarch::jupyter_console-6.4.3-pyhd3eb1b0_0
jupyter_core pkgs/main/linux-64::jupyter_core-4.11.2-py38h06a4308_0
jupyter_server pkgs/main/linux-64::jupyter_server-1.18.1-py38h06a4308_0
jupyterlab pkgs/main/linux-64::jupyterlab-3.4.4-py38h06a4308_0
jupyterlab_pygmen~ pkgs/main/noarch::jupyterlab_pygments-0.1.2-py_0
jupyterlab_server pkgs/main/linux-64::jupyterlab_server-2.15.2-py38h06a4308_0
jupyterlab_widgets pkgs/main/noarch::jupyterlab_widgets-1.0.0-pyhd3eb1b0_1
krb5 pkgs/main/linux-64::krb5-1.19.2-hac12032_0
lerc pkgs/main/linux-64::lerc-3.0-h295c915_0
libclang pkgs/main/linux-64::libclang-10.0.1-default_hb85057a_2
libdeflate pkgs/main/linux-64::libdeflate-1.8-h7f8727e_5
libedit pkgs/main/linux-64::libedit-3.1.20210910-h7f8727e_0
libevent pkgs/main/linux-64::libevent-2.1.12-h8f2d780_0
libllvm10 pkgs/main/linux-64::libllvm10-10.0.1-hbcb73fb_5
libpng pkgs/main/linux-64::libpng-1.6.37-hbc83047_0
libpq pkgs/main/linux-64::libpq-12.9-h16c4e8d_3
libsodium pkgs/main/linux-64::libsodium-1.0.18-h7b6447c_0
libtiff pkgs/main/linux-64::libtiff-4.4.0-hecacb30_2
libuuid pkgs/main/linux-64::libuuid-1.41.5-h5eee18b_0
libwebp pkgs/main/linux-64::libwebp-1.2.4-h11a3e52_0
libwebp-base pkgs/main/linux-64::libwebp-base-1.2.4-h5eee18b_0
libxcb pkgs/main/linux-64::libxcb-1.15-h7f8727e_0
libxkbcommon pkgs/main/linux-64::libxkbcommon-1.0.1-hfa300c1_0
libxml2 pkgs/main/linux-64::libxml2-2.9.14-h74e7548_0
libxslt pkgs/main/linux-64::libxslt-1.1.35-h4e12654_0
lxml pkgs/main/linux-64::lxml-4.9.1-py38h1edc446_0
lz4-c pkgs/main/linux-64::lz4-c-1.9.3-h295c915_1
markupsafe pkgs/main/linux-64::markupsafe-2.1.1-py38h7f8727e_0
matplotlib-inline pkgs/main/linux-64::matplotlib-inline-0.1.6-py38h06a4308_0
mistune pkgs/main/linux-64::mistune-0.8.4-py38h7b6447c_1000
nbclassic pkgs/main/linux-64::nbclassic-0.4.8-py38h06a4308_0
nbclient pkgs/main/linux-64::nbclient-0.5.13-py38h06a4308_0
nbconvert pkgs/main/linux-64::nbconvert-6.5.4-py38h06a4308_0
nbformat pkgs/main/linux-64::nbformat-5.5.0-py38h06a4308_0
nest-asyncio pkgs/main/linux-64::nest-asyncio-1.5.5-py38h06a4308_0
notebook pkgs/main/linux-64::notebook-6.5.2-py38h06a4308_0
notebook-shim pkgs/main/linux-64::notebook-shim-0.2.2-py38h06a4308_0
nspr pkgs/main/linux-64::nspr-4.33-h295c915_0
nss pkgs/main/linux-64::nss-3.74-h0370c37_0
packaging pkgs/main/noarch::packaging-21.3-pyhd3eb1b0_0
pandocfilters pkgs/main/noarch::pandocfilters-1.5.0-pyhd3eb1b0_0
parso pkgs/main/noarch::parso-0.8.3-pyhd3eb1b0_0
pcre pkgs/main/linux-64::pcre-8.45-h295c915_0
pexpect pkgs/main/noarch::pexpect-4.8.0-pyhd3eb1b0_3
pickleshare pkgs/main/noarch::pickleshare-0.7.5-pyhd3eb1b0_1003
pkgutil-resolve-n~ pkgs/main/linux-64::pkgutil-resolve-name-1.3.10-py38h06a4308_0
ply pkgs/main/linux-64::ply-3.11-py38_0
prometheus_client pkgs/main/linux-64::prometheus_client-0.14.1-py38h06a4308_0
prompt-toolkit pkgs/main/noarch::prompt-toolkit-3.0.20-pyhd3eb1b0_0
prompt_toolkit pkgs/main/noarch::prompt_toolkit-3.0.20-hd3eb1b0_0
psutil pkgs/main/linux-64::psutil-5.9.0-py38h5eee18b_0
ptyprocess pkgs/main/noarch::ptyprocess-0.7.0-pyhd3eb1b0_2
pure_eval pkgs/main/noarch::pure_eval-0.2.2-pyhd3eb1b0_0
pycparser pkgs/main/noarch::pycparser-2.21-pyhd3eb1b0_0
pygments pkgs/main/noarch::pygments-2.11.2-pyhd3eb1b0_0
pyopenssl pkgs/main/noarch::pyopenssl-22.0.0-pyhd3eb1b0_0
pyparsing pkgs/main/linux-64::pyparsing-3.0.9-py38h06a4308_0
pyqt pkgs/main/linux-64::pyqt-5.15.7-py38h6a678d5_1
pyqt5-sip pkgs/main/linux-64::pyqt5-sip-12.11.0-py38h6a678d5_1
pyrsistent pkgs/main/linux-64::pyrsistent-0.18.0-py38heee7806_0
pysocks pkgs/main/linux-64::pysocks-1.7.1-py38h06a4308_0
python-dateutil pkgs/main/noarch::python-dateutil-2.8.2-pyhd3eb1b0_0
python-fastjsonsc~ pkgs/main/linux-64::python-fastjsonschema-2.16.2-py38h06a4308_0
pytz pkgs/main/linux-64::pytz-2022.1-py38h06a4308_0
pyzmq pkgs/main/linux-64::pyzmq-23.2.0-py38h6a678d5_0
qt-main pkgs/main/linux-64::qt-main-5.15.2-h327a75a_7
qt-webengine pkgs/main/linux-64::qt-webengine-5.15.9-hd2b0992_4
qtconsole pkgs/main/linux-64::qtconsole-5.3.2-py38h06a4308_0
qtpy pkgs/main/linux-64::qtpy-2.2.0-py38h06a4308_0
qtwebkit pkgs/main/linux-64::qtwebkit-5.212-h4eab89a_4
requests pkgs/main/linux-64::requests-2.28.1-py38h06a4308_0
send2trash pkgs/main/noarch::send2trash-1.8.0-pyhd3eb1b0_1
sip pkgs/main/linux-64::sip-6.6.2-py38h6a678d5_0
six pkgs/main/noarch::six-1.16.0-pyhd3eb1b0_1
sniffio pkgs/main/linux-64::sniffio-1.2.0-py38h06a4308_1
soupsieve pkgs/main/linux-64::soupsieve-2.3.2.post1-py38h06a4308_0
stack_data pkgs/main/noarch::stack_data-0.2.0-pyhd3eb1b0_0
terminado pkgs/main/linux-64::terminado-0.13.1-py38h06a4308_0
tinycss2 pkgs/main/linux-64::tinycss2-1.2.1-py38h06a4308_0
toml pkgs/main/noarch::toml-0.10.2-pyhd3eb1b0_0
tornado pkgs/main/linux-64::tornado-6.2-py38h5eee18b_0
traitlets pkgs/main/noarch::traitlets-5.1.1-pyhd3eb1b0_0
typing-extensions pkgs/main/linux-64::typing-extensions-4.3.0-py38h06a4308_0
typing_extensions pkgs/main/linux-64::typing_extensions-4.3.0-py38h06a4308_0
urllib3 pkgs/main/linux-64::urllib3-1.26.12-py38h06a4308_0
wcwidth pkgs/main/noarch::wcwidth-0.2.5-pyhd3eb1b0_0
webencodings pkgs/main/linux-64::webencodings-0.5.1-py38_1
websocket-client pkgs/main/linux-64::websocket-client-0.58.0-py38h06a4308_4
widgetsnbextension pkgs/main/linux-64::widgetsnbextension-3.5.2-py38h06a4308_0
zeromq pkgs/main/linux-64::zeromq-4.3.4-h2531618_0
zipp pkgs/main/linux-64::zipp-3.8.0-py38h06a4308_0
zstd pkgs/main/linux-64::zstd-1.5.2-ha4553b6_0
The following packages will be DOWNGRADED:
libffi 3.4.2-h295c915_4 --> 3.3-he6710b0_2
python 3.8.15-h3fd9d12_0 --> 3.8.13-haa1d7c7_1
Proceed ([y]/n)? y
Downloading and Extracting Packages
websocket-client-0.5 | 66 KB | ################################################################################### | 100%
json5-0.9.6 | 21 KB | ################################################################################### | 100%
qtwebkit-5.212 | 14.3 MB | ################################################################################### | 100%
toml-0.10.2 | 20 KB | ################################################################################### | 100%
pygments-2.11.2 | 759 KB | ################################################################################### | 100%
jpeg-9e | 240 KB | ################################################################################### | 100%
ipython_genutils-0.2 | 27 KB | ################################################################################### | 100%
prompt_toolkit-3.0.2 | 12 KB | ################################################################################### | 100%
soupsieve-2.3.2.post | 65 KB | ################################################################################### | 100%
jupyterlab_server-2. | 75 KB | ################################################################################### | 100%
argon2-cffi-bindings | 33 KB | ################################################################################### | 100%
dbus-1.13.18 | 504 KB | ################################################################################### | 100%
python-dateutil-2.8. | 233 KB | ################################################################################### | 100%
pycparser-2.21 | 94 KB | ################################################################################### | 100%
pyrsistent-0.18.0 | 94 KB | ################################################################################### | 100%
psutil-5.9.0 | 330 KB | ################################################################################### | 100%
mistune-0.8.4 | 55 KB | ################################################################################### | 100%
jupyter_core-4.11.2 | 80 KB | ################################################################################### | 100%
libwebp-1.2.4 | 79 KB | ################################################################################### | 100%
zeromq-4.3.4 | 331 KB | ################################################################################### | 100%
pyqt-5.15.7 | 5.1 MB | ################################################################################### | 100%
executing-0.8.3 | 18 KB | ################################################################################### | 100%
packaging-21.3 | 36 KB | ################################################################################### | 100%
urllib3-1.26.12 | 182 KB | ################################################################################### | 100%
sniffio-1.2.0 | 15 KB | ################################################################################### | 100%
pkgutil-resolve-name | 9 KB | ################################################################################### | 100%
jupyterlab_widgets-1 | 109 KB | ################################################################################### | 100%
nbformat-5.5.0 | 128 KB | ################################################################################### | 100%
importlib_resources- | 21 KB | ################################################################################### | 100%
jinja2-3.1.2 | 211 KB | ################################################################################### | 100%
gstreamer-1.14.0 | 3.2 MB | ################################################################################### | 100%
stack_data-0.2.0 | 22 KB | ################################################################################### | 100%
qtpy-2.2.0 | 84 KB | ################################################################################### | 100%
backcall-0.2.0 | 13 KB | ################################################################################### | 100%
matplotlib-inline-0. | 16 KB | ################################################################################### | 100%
pandocfilters-1.5.0 | 11 KB | ################################################################################### | 100%
libpq-12.9 | 2.1 MB | ################################################################################### | 100%
jupyterlab-3.4.4 | 3.7 MB | ################################################################################### | 100%
pexpect-4.8.0 | 53 KB | ################################################################################### | 100%
nss-3.74 | 1.9 MB | ################################################################################### | 100%
jupyter_console-6.4. | 23 KB | ################################################################################### | 100%
pyopenssl-22.0.0 | 50 KB | ################################################################################### | 100%
entrypoints-0.4 | 16 KB | ################################################################################### | 100%
anyio-3.5.0 | 165 KB | ################################################################################### | 100%
libsodium-1.0.18 | 244 KB | ################################################################################### | 100%
nspr-4.33 | 222 KB | ################################################################################### | 100%
freetype-2.12.1 | 626 KB | ################################################################################### | 100%
jsonschema-4.16.0 | 128 KB | ################################################################################### | 100%
idna-3.4 | 93 KB | ################################################################################### | 100%
libxslt-1.1.35 | 453 KB | ################################################################################### | 100%
jupyter_client-7.3.5 | 192 KB | ################################################################################### | 100%
pytz-2022.1 | 196 KB | ################################################################################### | 100%
libllvm10-10.0.1 | 22.1 MB | ################################################################################### | 100%
pure_eval-0.2.2 | 14 KB | ################################################################################### | 100%
libxkbcommon-1.0.1 | 483 KB | ################################################################################### | 100%
nest-asyncio-1.5.5 | 16 KB | ################################################################################### | 100%
libdeflate-1.8 | 51 KB | ################################################################################### | 100%
cffi-1.15.1 | 228 KB | ################################################################################### | 100%
qt-main-5.15.2 | 45.1 MB | ################################################################################### | 100%
expat-2.4.9 | 156 KB | ################################################################################### | 100%
send2trash-1.8.0 | 19 KB | ################################################################################### | 100%
notebook-shim-0.2.2 | 22 KB | ################################################################################### | 100%
importlib-metadata-4 | 40 KB | ################################################################################### | 100%
libxcb-1.15 | 505 KB | ################################################################################### | 100%
libxml2-2.9.14 | 718 KB | ################################################################################### | 100%
nbclassic-0.4.8 | 5.8 MB | ################################################################################### | 100%
asttokens-2.0.5 | 20 KB | ################################################################################### | 100%
debugpy-1.5.1 | 1.7 MB | ################################################################################### | 100%
argon2-cffi-21.3.0 | 15 KB | ################################################################################### | 100%
gst-plugins-base-1.1 | 4.9 MB | ################################################################################### | 100%
decorator-5.1.1 | 12 KB | ################################################################################### | 100%
brotlipy-0.7.0 | 323 KB | ################################################################################### | 100%
libuuid-1.41.5 | 27 KB | ################################################################################### | 100%
widgetsnbextension-3 | 651 KB | ################################################################################### | 100%
pickleshare-0.7.5 | 13 KB | ################################################################################### | 100%
typing_extensions-4. | 42 KB | ################################################################################### | 100%
zipp-3.8.0 | 15 KB | ################################################################################### | 100%
terminado-0.13.1 | 30 KB | ################################################################################### | 100%
lz4-c-1.9.3 | 185 KB | ################################################################################### | 100%
parso-0.8.3 | 70 KB | ################################################################################### | 100%
pysocks-1.7.1 | 31 KB | ################################################################################### | 100%
nbclient-0.5.13 | 91 KB | ################################################################################### | 100%
tinycss2-1.2.1 | 40 KB | ################################################################################### | 100%
bleach-4.1.0 | 123 KB | ################################################################################### | 100%
libtiff-4.4.0 | 526 KB | ################################################################################### | 100%
requests-2.28.1 | 92 KB | ################################################################################### | 100%
prompt-toolkit-3.0.2 | 259 KB | ################################################################################### | 100%
libclang-10.0.1 | 10.8 MB | ################################################################################### | 100%
nbconvert-6.5.4 | 513 KB | ################################################################################### | 100%
cryptography-38.0.1 | 1.3 MB | ################################################################################### | 100%
babel-2.9.1 | 5.5 MB | ################################################################################### | 100%
libedit-3.1.20210910 | 166 KB | ################################################################################### | 100%
pyparsing-3.0.9 | 152 KB | ################################################################################### | 100%
prometheus_client-0. | 90 KB | ################################################################################### | 100%
ipykernel-6.15.2 | 190 KB | ################################################################################### | 100%
typing-extensions-4. | 9 KB | ################################################################################### | 100%
charset-normalizer-2 | 35 KB | ################################################################################### | 100%
lxml-4.9.1 | 1.3 MB | ################################################################################### | 100%
six-1.16.0 | 18 KB | ################################################################################### | 100%
webencodings-0.5.1 | 20 KB | ################################################################################### | 100%
ipython-8.6.0 | 1.0 MB | ################################################################################### | 100%
sip-6.6.2 | 425 KB | ################################################################################### | 100%
python-fastjsonschem | 230 KB | ################################################################################### | 100%
libevent-2.1.12 | 425 KB | ################################################################################### | 100%
pcre-8.45 | 207 KB | ################################################################################### | 100%
glib-2.69.1 | 1.7 MB | ################################################################################### | 100%
jupyter-1.0.0 | 7 KB | ################################################################################### | 100%
beautifulsoup4-4.11. | 185 KB | ################################################################################### | 100%
krb5-1.19.2 | 1.2 MB | ################################################################################### | 100%
ipywidgets-7.6.5 | 105 KB | ################################################################################### | 100%
pyzmq-23.2.0 | 448 KB | ################################################################################### | 100%
wcwidth-0.2.5 | 26 KB | ################################################################################### | 100%
libwebp-base-1.2.4 | 347 KB | ################################################################################### | 100%
jupyterlab_pygments- | 8 KB | ################################################################################### | 100%
fontconfig-2.13.1 | 260 KB | ################################################################################### | 100%
qt-webengine-5.15.9 | 47.1 MB | ################################################################################### | 100%
lerc-3.0 | 196 KB | ################################################################################### | 100%
giflib-5.2.1 | 78 KB | ################################################################################### | 100%
ptyprocess-0.7.0 | 17 KB | ################################################################################### | 100%
python-3.8.13 | 20.2 MB | ################################################################################### | 100%
markupsafe-2.1.1 | 21 KB | ################################################################################### | 100%
defusedxml-0.7.1 | 23 KB | ################################################################################### | 100%
notebook-6.5.2 | 510 KB | ################################################################################### | 100%
traitlets-5.1.1 | 84 KB | ################################################################################### | 100%
tornado-6.2 | 590 KB | ################################################################################### | 100%
pyqt5-sip-12.11.0 | 87 KB | ################################################################################### | 100%
icu-58.2 | 10.5 MB | ################################################################################### | 100%
ply-3.11 | 81 KB | ################################################################################### | 100%
attrs-21.4.0 | 51 KB | ################################################################################### | 100%
jupyter_server-1.18. | 356 KB | ################################################################################### | 100%
qtconsole-5.3.2 | 176 KB | ################################################################################### | 100%
zstd-1.5.2 | 488 KB | ################################################################################### | 100%
jedi-0.18.1 | 982 KB | ################################################################################### | 100%
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
(vit) yekyaw.thu@gpu:~$
Keep doing installation ...
(vit) yekyaw.thu@gpu:~$ conda install -n base nb_conda_kernels
Collecting package metadata (current_repodata.json): done
Solving environment: done
## Package Plan ##
environment location: /opt/anaconda/anaconda3
added / updated specs:
- nb_conda_kernels
The following packages will be downloaded:
package | build
---------------------------|-----------------
nb_conda_kernels-2.3.1 | py37h06a4308_0 27 KB
------------------------------------------------------------
Total: 27 KB
The following NEW packages will be INSTALLED:
nb_conda_kernels pkgs/main/linux-64::nb_conda_kernels-2.3.1-py37h06a4308_0
The following packages will be UPDATED:
conda 4.8.2-py37_0 --> 22.9.0-py37h06a4308_0
Proceed ([y]/n)? y
Downloading and Extracting Packages
nb_conda_kernels-2.3 | 27 KB | ################################################################################### | 100%
Preparing transaction: done
Verifying transaction: failed
EnvironmentNotWritableError: The current user does not have write permissions to the target environment.
environment location: /opt/anaconda/anaconda3
uid: 804601154
gid: 804600513
(vit) yekyaw.thu@gpu:~$
Got error as shown in above!
On GPU server side:
jupyter notebook --no-browser --port=8080
output screen is as follows:
(vit) yekyaw.thu@gpu:~$ jupyter notebook --no-browser --port=8080
[I 13:05:37.316 NotebookApp] Writing notebook server cookie secret to /home/yekyaw.thu/.local/share/jupyter/runtime/notebook_cookie_secret
[W 2022-11-17 13:05:37.699 LabApp] 'port' has moved from NotebookApp to ServerApp. This config will be passed to ServerApp. Be sure to update your config before our next release.
[W 2022-11-17 13:05:37.699 LabApp] 'port' has moved from NotebookApp to ServerApp. This config will be passed to ServerApp. Be sure to update your config before our next release.
[W 2022-11-17 13:05:37.699 LabApp] 'port' has moved from NotebookApp to ServerApp. This config will be passed to ServerApp. Be sure to update your config before our next release.
[I 2022-11-17 13:05:37.708 LabApp] JupyterLab extension loaded from /home/yekyaw.thu/.conda/envs/vit/lib/python3.8/site-packages/jupyterlab
[I 2022-11-17 13:05:37.708 LabApp] JupyterLab application directory is /home/yekyaw.thu/.conda/envs/vit/share/jupyter/lab
[I 13:05:37.713 NotebookApp] Serving notebooks from local directory: /home/yekyaw.thu
[I 13:05:37.713 NotebookApp] Jupyter Notebook 6.5.2 is running at:
[I 13:05:37.713 NotebookApp] http://localhost:8080/?token=e6c91440cde3b109caa2f82912b4fcd177a263ce54123fb3
[I 13:05:37.713 NotebookApp] or http://127.0.0.1:8080/?token=e6c91440cde3b109caa2f82912b4fcd177a263ce54123fb3
[I 13:05:37.713 NotebookApp] Use Control-C to stop this server and shut down all kernels (twice to skip confirmation).
[C 13:05:37.717 NotebookApp]
To access the notebook, open this file in a browser:
file:///home/yekyaw.thu/.local/share/jupyter/runtime/nbserver-215462-open.html
Or copy and paste one of these URLs:
http://localhost:8080/?token=e6c91440cde3b109caa2f82912b4fcd177a263ce54123fb3
or http://127.0.0.1:8080/?token=e6c91440cde3b109caa2f82912b4fcd177a263ce54123fb3
[I 13:11:49.239 NotebookApp] 302 GET /tree (127.0.0.1) 1.220000ms
[W 13:12:35.006 NotebookApp] 401 POST /login?next=%2Ftree (127.0.0.1) 1.550000ms referer=http://localhost:8080/login?next=%2Ftree
[W 13:12:38.577 NotebookApp] 401 POST /login?next=%2Ftree (127.0.0.1) 1.430000ms referer=http://localhost:8080/login?next=%2Ftree
[I 13:13:18.248 NotebookApp] 302 POST /login?next=%2Ftree (127.0.0.1) 1.080000ms
Note following information is the token to access from your local machine:
http://localhost:8080/?token=e6c91440cde3b109caa2f82912b4fcd177a263ce54123fb3
or http://127.0.0.1:8080/?token=e6c91440cde3b109caa2f82912b4fcd177a263ce54123fb3
open a new terminal and run like following command pattern:
ssh -L 8080:localhost: <REMOTE_USER>@<REMOTE_HOST>
Actual running command is as follows:
C:\Users\801680>ssh -p xxxx -L localhost:8080:localhost:8080 -i C:\Users\801680\.ssh\id_rsa-for-cadt-gpu-server yekyaw.thu@103.16.63.233
Enter passphrase for key 'C:\Users\801680\.ssh\id_rsa-for-cadt-gpu-server':
Welcome to Ubuntu 20.04.3 LTS (GNU/Linux 5.4.0-131-generic x86_64)
* Documentation: https://help.ubuntu.com
* Management: https://landscape.canonical.com
* Support: https://ubuntu.com/advantage
System information as of Thu 17 Nov 2022 01:11:12 PM +07
System load: 8.93 Processes: 587
Usage of /home: 46.0% of 1.79TB Users logged in: 1
Memory usage: 12% IPv4 address for docker0: 172.17.0.1
Swap usage: 0% IPv4 address for enp8s0: 10.5.5.50
* Strictly confined Kubernetes makes edge and IoT secure. Learn how MicroK8s
just raised the bar for easy, resilient and secure K8s cluster deployment.
https://ubuntu.com/engage/secure-kubernetes-at-the-edge
184 updates can be applied immediately.
11 of these updates are standard security updates.
To see these additional updates run: apt list --upgradable
New release '22.04.1 LTS' available.
Run 'do-release-upgrade' to upgrade to it.
Last login: Thu Nov 17 13:08:43 2022 from 172.23.21.121
yekyaw.thu@gpu:~$
Access with my local browser:
Install numpy library ...
(vit) yekyaw.thu@gpu:~$ pip install numpy
Collecting numpy
Downloading numpy-1.23.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (17.1 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 17.1/17.1 MB 1.1 MB/s eta 0:00:00
Installing collected packages: numpy
Successfully installed numpy-1.23.4
(vit) yekyaw.thu@gpu:~$
Install matplotlib library ...
(vit) yekyaw.thu@gpu:~$ pip install matplotlib
Collecting matplotlib
Downloading matplotlib-3.6.2-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (9.4 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 9.4/9.4 MB 1.2 MB/s eta 0:00:00
Requirement already satisfied: pyparsing>=2.2.1 in ./.conda/envs/vit/lib/python3.8/site-packages (from matplotlib) (3.0.9)
Requirement already satisfied: packaging>=20.0 in ./.conda/envs/vit/lib/python3.8/site-packages (from matplotlib) (21.3)
Requirement already satisfied: python-dateutil>=2.7 in ./.conda/envs/vit/lib/python3.8/site-packages (from matplotlib) (2.8.2)
Collecting cycler>=0.10
Using cached cycler-0.11.0-py3-none-any.whl (6.4 kB)
Requirement already satisfied: numpy>=1.19 in ./.conda/envs/vit/lib/python3.8/site-packages (from matplotlib) (1.23.4)
Collecting fonttools>=4.22.0
Using cached fonttools-4.38.0-py3-none-any.whl (965 kB)
Collecting contourpy>=1.0.1
Downloading contourpy-1.0.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (295 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 296.0/296.0 kB 1.1 MB/s eta 0:00:00
Collecting pillow>=6.2.0
Downloading Pillow-9.3.0-cp38-cp38-manylinux_2_28_x86_64.whl (3.3 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.3/3.3 MB 598.5 kB/s eta 0:00:00
Collecting kiwisolver>=1.0.1
Downloading kiwisolver-1.4.4-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.whl (1.2 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 557.4 kB/s eta 0:00:00
Requirement already satisfied: six>=1.5 in ./.conda/envs/vit/lib/python3.8/site-packages (from python-dateutil>=2.7->matplotlib) (1.16.0)
Installing collected packages: pillow, kiwisolver, fonttools, cycler, contourpy, matplotlib
Successfully installed contourpy-1.0.6 cycler-0.11.0 fonttools-4.38.0 kiwisolver-1.4.4 matplotlib-3.6.2 pillow-9.3.0
(vit) yekyaw.thu@gpu:~$
Upgrading the pip ...
(vit) yekyaw.thu@gpu:~$ pip install --upgrade pip
Requirement already satisfied: pip in ./.conda/envs/vit/lib/python3.8/site-packages (22.2.2)
Collecting pip
Downloading pip-22.3.1-py3-none-any.whl (2.1 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.1/2.1 MB 1.4 MB/s eta 0:00:00
Installing collected packages: pip
Attempting uninstall: pip
Found existing installation: pip 22.2.2
Uninstalling pip-22.2.2:
Successfully uninstalled pip-22.2.2
Successfully installed pip-22.3.1
(vit) yekyaw.thu@gpu:~$
Tensorflow Installation:
(vit) yekyaw.thu@gpu:~$ pip install tensorflow
Collecting tensorflow
Downloading tensorflow-2.10.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (578.1 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 578.1/578.1 MB 150.6 kB/s eta 0:00:00
Collecting opt-einsum>=2.3.2
Downloading opt_einsum-3.3.0-py3-none-any.whl (65 kB)
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Collecting tensorflow-io-gcs-filesystem>=0.23.1
Downloading tensorflow_io_gcs_filesystem-0.27.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (2.4 MB)
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Requirement already satisfied: packaging in ./.conda/envs/vit/lib/python3.8/site-packages (from tensorflow) (21.3)
Collecting absl-py>=1.0.0
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Collecting wrapt>=1.11.0
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Collecting protobuf<3.20,>=3.9.2
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Collecting tensorflow-estimator<2.11,>=2.10.0
Downloading tensorflow_estimator-2.10.0-py2.py3-none-any.whl (438 kB)
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Collecting keras<2.11,>=2.10.0
Downloading keras-2.10.0-py2.py3-none-any.whl (1.7 MB)
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Collecting h5py>=2.9.0
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Requirement already satisfied: setuptools in ./.conda/envs/vit/lib/python3.8/site-packages (from tensorflow) (65.5.0)
Collecting gast<=0.4.0,>=0.2.1
Downloading gast-0.4.0-py3-none-any.whl (9.8 kB)
Collecting grpcio<2.0,>=1.24.3
Downloading grpcio-1.50.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.7 MB)
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Requirement already satisfied: six>=1.12.0 in ./.conda/envs/vit/lib/python3.8/site-packages (from tensorflow) (1.16.0)
Collecting astunparse>=1.6.0
Downloading astunparse-1.6.3-py2.py3-none-any.whl (12 kB)
Collecting tensorboard<2.11,>=2.10
Downloading tensorboard-2.10.1-py3-none-any.whl (5.9 MB)
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Collecting termcolor>=1.1.0
Downloading termcolor-2.1.0-py3-none-any.whl (5.8 kB)
Collecting flatbuffers>=2.0
Downloading flatbuffers-22.10.26-py2.py3-none-any.whl (26 kB)
Collecting libclang>=13.0.0
Downloading libclang-14.0.6-py2.py3-none-manylinux2010_x86_64.whl (14.1 MB)
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Requirement already satisfied: typing-extensions>=3.6.6 in ./.conda/envs/vit/lib/python3.8/site-packages (from tensorflow) (4.3.0)
Collecting google-pasta>=0.1.1
Downloading google_pasta-0.2.0-py3-none-any.whl (57 kB)
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Collecting keras-preprocessing>=1.1.1
Downloading Keras_Preprocessing-1.1.2-py2.py3-none-any.whl (42 kB)
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Requirement already satisfied: requests<3,>=2.21.0 in ./.conda/envs/vit/lib/python3.8/site-packages (from tensorboard<2.11,>=2.10->tensorflow) (2.28.1)
Collecting markdown>=2.6.8
Downloading Markdown-3.4.1-py3-none-any.whl (93 kB)
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Collecting werkzeug>=1.0.1
Downloading Werkzeug-2.2.2-py3-none-any.whl (232 kB)
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Collecting google-auth-oauthlib<0.5,>=0.4.1
Downloading google_auth_oauthlib-0.4.6-py2.py3-none-any.whl (18 kB)
Collecting google-auth<3,>=1.6.3
Downloading google_auth-2.14.1-py2.py3-none-any.whl (175 kB)
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Collecting tensorboard-plugin-wit>=1.6.0
Downloading tensorboard_plugin_wit-1.8.1-py3-none-any.whl (781 kB)
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Collecting tensorboard-data-server<0.7.0,>=0.6.0
Downloading tensorboard_data_server-0.6.1-py3-none-manylinux2010_x86_64.whl (4.9 MB)
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Collecting rsa<5,>=3.1.4
Downloading rsa-4.9-py3-none-any.whl (34 kB)
Collecting cachetools<6.0,>=2.0.0
Downloading cachetools-5.2.0-py3-none-any.whl (9.3 kB)
Collecting pyasn1-modules>=0.2.1
Downloading pyasn1_modules-0.2.8-py2.py3-none-any.whl (155 kB)
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Collecting requests-oauthlib>=0.7.0
Downloading requests_oauthlib-1.3.1-py2.py3-none-any.whl (23 kB)
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Collecting pyasn1<0.5.0,>=0.4.6
Downloading pyasn1-0.4.8-py2.py3-none-any.whl (77 kB)
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Collecting oauthlib>=3.0.0
Downloading oauthlib-3.2.2-py3-none-any.whl (151 kB)
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Installing collected packages: tensorboard-plugin-wit, pyasn1, libclang, keras, flatbuffers, wrapt, werkzeug, termcolor, tensorflow-io-gcs-filesystem, tensorflow-estimator, tensorboard-data-server, rsa, pyasn1-modules, protobuf, opt-einsum, oauthlib, keras-preprocessing, h5py, grpcio, google-pasta, gast, cachetools, astunparse, absl-py, requests-oauthlib, markdown, google-auth, google-auth-oauthlib, tensorboard, tensorflow
Successfully installed absl-py-1.3.0 astunparse-1.6.3 cachetools-5.2.0 flatbuffers-22.10.26 gast-0.4.0 google-auth-2.14.1 google-auth-oauthlib-0.4.6 google-pasta-0.2.0 grpcio-1.50.0 h5py-3.7.0 keras-2.10.0 keras-preprocessing-1.1.2 libclang-14.0.6 markdown-3.4.1 oauthlib-3.2.2 opt-einsum-3.3.0 protobuf-3.19.6 pyasn1-0.4.8 pyasn1-modules-0.2.8 requests-oauthlib-1.3.1 rsa-4.9 tensorboard-2.10.1 tensorboard-data-server-0.6.1 tensorboard-plugin-wit-1.8.1 tensorflow-2.10.1 tensorflow-estimator-2.10.0 tensorflow-io-gcs-filesystem-0.27.0 termcolor-2.1.0 werkzeug-2.2.2 wrapt-1.14.1
(vit) yekyaw.thu@gpu:~$
Installation of scikit-learn ...
(vit) yekyaw.thu@gpu:~$ pip install scikit-learn
Collecting scikit-learn
Downloading scikit_learn-1.1.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (31.2 MB)
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Collecting scipy>=1.3.2
Downloading scipy-1.9.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (33.8 MB)
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Collecting threadpoolctl>=2.0.0
Using cached threadpoolctl-3.1.0-py3-none-any.whl (14 kB)
Requirement already satisfied: numpy>=1.17.3 in ./.conda/envs/vit/lib/python3.8/site-packages (from scikit-learn) (1.23.4)
Collecting joblib>=1.0.0
Using cached joblib-1.2.0-py3-none-any.whl (297 kB)
Installing collected packages: threadpoolctl, scipy, joblib, scikit-learn
Successfully installed joblib-1.2.0 scikit-learn-1.1.3 scipy-1.9.3 threadpoolctl-3.1.0
(vit) yekyaw.thu@gpu:~$ python
Python 3.8.13 (default, Oct 21 2022, 23:50:54)
[GCC 11.2.0] :: Anaconda, Inc. on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import sklearn
>>> exit()
(vit) yekyaw.thu@gpu:~$
Installation of pydot ...
(vit) yekyaw.thu@gpu:~$ pip install pydot
Collecting pydot
Downloading pydot-1.4.2-py2.py3-none-any.whl (21 kB)
Requirement already satisfied: pyparsing>=2.1.4 in ./.conda/envs/vit/lib/python3.8/site-packages (from pydot) (3.0.9)
Installing collected packages: pydot
Installation of graphviz ...
Successfully installed pydot-1.4.2
(vit) yekyaw.thu@gpu:~$ pip install graphviz
Collecting graphviz
Downloading graphviz-0.20.1-py3-none-any.whl (47 kB)
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Installing collected packages: graphviz
Successfully installed graphviz-0.20.1
(vit) yekyaw.thu@gpu:~$
Although, I installed above two libraries, not able to import inside Jupyter.
And thus, I tried with git clone and install ...
(vit) yekyaw.thu@gpu:~/tool$ git clone https://gitlab.com/graphviz/graphviz.git
Cloning into 'graphviz'...
remote: Enumerating objects: 124966, done.
remote: Counting objects: 100% (1690/1690), done.
remote: Compressing objects: 100% (438/438), done.
remote: Total 124966 (delta 1286), reused 1633 (delta 1251), pack-reused 123276
Receiving objects: 100% (124966/124966), 180.04 MiB | 17.67 MiB/s, done.
Resolving deltas: 100% (96109/96109), done.
(vit) yekyaw.thu@gpu:~/tool$ cd graphviz/
(vit) yekyaw.thu@gpu:~/tool/graphviz$ ls
AUTHORS config-cmake.h.in doc graphviz.appdata.xml m4 requirements.txt
autogen.sh configure.ac dot.demo graphviz-centos.repo macosx rpm_notes.txt
ChangeLog contrib Doxyfile.in graphviz-fedora.repo Makefile.am share
CHANGELOG.md CONTRIBUTING.md epl_inserter.tcl graphviz.sln NEWS tclpkg
ci COPYING epl-v10.html graphviz.spec plugin tests
cmake cpl1.0.txt epl-v10.txt graphviz_version.h.cmake plugin.demo windows
CMakeLists.txt debian gen_version.py lib README
cmd developers graphs LICENSE README.md
config DEVELOPERS.md graphviz.7 loadimage_test.sh redhat
(vit) yekyaw.thu@gpu:~/tool/graphviz$
Like normal installation in Linux ...
(vit) yekyaw.thu@gpu:~/tool/graphviz$ ./autogen.sh
Graphviz: version date is based on time of last commit: 20221117.0557
Graphviz: abbreviated hash of last commit: c30618657
autoreconf: Entering directory `.'
autoreconf: configure.ac: not using Gettext
autoreconf: running: aclocal --force -I m4
autoreconf: configure.ac: tracing
autoreconf: configure.ac: subdirectory libltdl not present
autoreconf: running: libtoolize --copy --force --ltdl
libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'.
libtoolize: copying file 'config/compile'
libtoolize: copying file 'config/config.guess'
libtoolize: copying file 'config/config.sub'
libtoolize: copying file 'config/depcomp'
libtoolize: copying file 'config/install-sh'
libtoolize: copying file 'config/missing'
libtoolize: copying file 'config/ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltargz.m4'
libtoolize: copying file 'm4/ltdl.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
libtoolize: putting libltdl files in LT_CONFIG_LTDL_DIR, 'libltdl'.
libtoolize: copying file 'libltdl/COPYING.LIB'
libtoolize: creating file 'libltdl/Makefile.am'
libtoolize: copying file 'libltdl/README'
libtoolize: creating file 'libltdl/configure.ac'
libtoolize: copying file 'libltdl/aclocal.m4'
libtoolize: creating file 'libltdl/Makefile.in'
libtoolize: copying file 'libltdl/config-h.in'
libtoolize: creating file 'libltdl/configure'
libtoolize: copying file 'libltdl/libltdl/lt__alloc.h'
libtoolize: copying file 'libltdl/libltdl/lt__argz_.h'
libtoolize: copying file 'libltdl/libltdl/lt__dirent.h'
libtoolize: copying file 'libltdl/libltdl/lt__glibc.h'
libtoolize: copying file 'libltdl/libltdl/lt__private.h'
libtoolize: copying file 'libltdl/libltdl/lt__strl.h'
libtoolize: copying file 'libltdl/libltdl/lt_dlloader.h'
libtoolize: copying file 'libltdl/libltdl/lt_error.h'
libtoolize: copying file 'libltdl/libltdl/lt_system.h'
libtoolize: copying file 'libltdl/libltdl/slist.h'
libtoolize: copying file 'libltdl/loaders/dld_link.c'
libtoolize: copying file 'libltdl/loaders/dlopen.c'
libtoolize: copying file 'libltdl/loaders/dyld.c'
libtoolize: copying file 'libltdl/loaders/load_add_on.c'
libtoolize: copying file 'libltdl/loaders/loadlibrary.c'
libtoolize: copying file 'libltdl/loaders/preopen.c'
libtoolize: copying file 'libltdl/loaders/shl_load.c'
libtoolize: copying file 'libltdl/lt__alloc.c'
libtoolize: copying file 'libltdl/lt__argz.c'
libtoolize: copying file 'libltdl/lt__dirent.c'
libtoolize: copying file 'libltdl/lt__strl.c'
libtoolize: copying file 'libltdl/lt_dlloader.c'
libtoolize: copying file 'libltdl/lt_error.c'
libtoolize: copying file 'libltdl/ltdl.c'
libtoolize: copying file 'libltdl/ltdl.h'
libtoolize: copying file 'libltdl/slist.c'
autoreconf: running: /usr/bin/autoconf --force
autoreconf: running: /usr/bin/autoheader --force
autoreconf: running: automake --add-missing --copy --force-missing
Makefile.am: installing './INSTALL'
configure.ac: installing 'config/ylwrap'
parallel-tests: installing 'config/test-driver'
autoreconf: Leaving directory `.'
(vit) yekyaw.thu@gpu:~/tool/graphviz$
Check the output "./configure" file ...
(vit) yekyaw.thu@gpu:~/tool/graphviz$ ./config
config/ configure
(vit) yekyaw.thu@gpu:~/tool/graphviz$
Run ./configure
(vit) yekyaw.thu@gpu:~/tool/graphviz$ ./configure
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether UID '804601154' is supported by ustar format... no
checking whether GID '804600513' is supported by ustar format... no
checking how to create a ustar tar archive... none
checking whether make supports nested variables... (cached) yes
checking whether make supports the include directive... yes (GNU style)
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... gcc3
checking for flex... no
checking for lex... no
checking for bison... no
checking for byacc... no
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking whether ln -s works... yes
checking how to print strings... printf
checking for a sed that does not truncate output... (cached) /usr/bin/sed
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /usr/bin/dd
checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1
checking for mt... mt
checking if mt is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for groff... groff
checking for ps2pdf... ps2pdf
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for tclsh8.6... no
checking for tclsh8.5... no
checking for tclsh8.4... no
checking for tclsh8.3... no
checking for tclsh... no
checking for gcc option to accept ISO C99... none needed
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... gcc3
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether g++ supports C++11 features with -std=c++11... yes
checking for gcc... gcc
checking whether we are using the GNU Objective C compiler... no
checking whether gcc accepts -g... no
checking dependency style of gcc... gcc3
checking for inline... inline
checking whether C compiler accepts -Wtrampolines... yes
checking whether C compiler accepts -Wlogical-op... yes
checking for windres... no
checking for x86_64-pc-linux-gnu-windres... no
checking for pid_t... yes
checking for ssize_t... yes
checking for uid_t in sys/types.h... yes
checking for off64_t... no
checking for struct stat64... no
checking for ... no
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking search.h usability... yes
checking search.h presence... yes
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checking stropts.h usability... no
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checking termios.h usability... yes
checking termios.h presence... yes
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checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for sys/types.h... (cached) yes
checking sys/select.h usability... yes
checking sys/select.h presence... yes
checking for sys/select.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking for sys/stat.h... (cached) yes
checking sys/mman.h usability... yes
checking sys/mman.h presence... yes
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checking sys/ioctl.h usability... yes
checking sys/ioctl.h presence... yes
checking for sys/ioctl.h... yes
checking sys/inotify.h usability... yes
checking sys/inotify.h presence... yes
checking for sys/inotify.h... yes
checking for main in -lm... yes
checking for sincos... yes
checking for lrand48... yes
checking for drand48... yes
checking for srand48... yes
checking for setmode... no
checking for setenv... yes
checking for ftruncate... yes
checking for lseek64... yes
checking for stat64... yes
checking for select... yes
checking for dl_iterate_phdr... yes
checking for strcasestr... yes
checking what extension is used for runtime loadable modules... .so
checking what variable specifies run-time module search path... LD_LIBRARY_PATH
checking for the default library search path... /lib /usr/lib /usr/local/cuda/targets/x86_64-linux/lib /usr/local/cuda-11/targets/x86_64-linux/lib /usr/lib/x86_64-linux-gnu/libfakeroot /usr/local/cuda-11.4/targets/x86_64-linux/lib /opt/intel/lib/intel64 /opt/intel/mkl/lib/intel64 /usr/local/lib /usr/local/lib/x86_64-linux-gnu /lib/x86_64-linux-gnu /usr/lib/x86_64-linux-gnu
checking for library containing dlopen... -ldl
checking for dlerror... yes
checking for shl_load... no
checking for shl_load in -ldld... no
checking for dld_link in -ldld... no
checking for _ prefix in compiled symbols... no
checking whether deplibs are loaded by dlopen... yes
checking for argz.h... yes
checking for error_t... yes
checking for argz_add... yes
checking for argz_append... yes
checking for argz_count... yes
checking for argz_create_sep... yes
checking for argz_insert... yes
checking for argz_next... yes
checking for argz_stringify... yes
checking if argz actually works... yes
checking whether libtool supports -dlopen/-dlpreopen... yes
checking for ltdl.h... yes
checking whether lt_dlinterface_register is declared... yes
checking for lt_dladvise_preload in -lltdl... yes
checking where to find libltdl headers...
checking where to find libltdl library... -lltdl
checking for unistd.h... (cached) yes
checking for dl.h... no
checking for sys/dl.h... no
checking for dld.h... no
checking for mach-o/dyld.h... no
checking for dirent.h... yes
checking for closedir... yes
checking for opendir... yes
checking for readdir... yes
checking for strlcat... no
checking for strlcpy... no
checking for lt_dladvise_init in -lltdl... yes
checking for X... libraries , headers
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... no
checking for XRENDER... no
checking for swig... no
checking tcl.h usability... no
checking tcl.h presence... no
checking for tcl.h... no
configure: WARNING: Unable to find header tcl.h. The Tcl packages will not be built
checking for connect... (cached) yes
checking for gethostbyname... (cached) yes
checking for expat-config... no
checking expat.h usability... yes
checking expat.h presence... yes
checking for expat.h... yes
checking for main in -lexpat... yes
checking IL/il.h usability... no
checking IL/il.h presence... no
checking for IL/il.h... no
configure: WARNING: Optional DevIL library not available - missing headers
checking for main in -lIL... no
configure: WARNING: Optional DevIL library not available
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for main in -lz... yes
checking for WEBP... no
checking for POPPLER... no
checking for RSVG... no
checking for PANGOCAIRO... no
checking for FREETYPE2... no
configure: WARNING: pkg-config did not find a freetype2.pc. Looking for freetype-config.
checking for freetype-config... /home/yekyaw.thu/.conda/envs/vit/bin/freetype-config
Package freetype2 was not found in the pkg-config search path.
Perhaps you should add the directory containing `freetype2.pc'
to the PKG_CONFIG_PATH environment variable
No package 'freetype2' found
Package freetype2 was not found in the pkg-config search path.
Perhaps you should add the directory containing `freetype2.pc'
to the PKG_CONFIG_PATH environment variable
No package 'freetype2' found
Package freetype2 was not found in the pkg-config search path.
Perhaps you should add the directory containing `freetype2.pc'
to the PKG_CONFIG_PATH environment variable
No package 'freetype2' found
Package freetype2 was not found in the pkg-config search path.
Perhaps you should add the directory containing `freetype2.pc'
to the PKG_CONFIG_PATH environment variable
No package 'freetype2' found
Package freetype2 was not found in the pkg-config search path.
Perhaps you should add the directory containing `freetype2.pc'
to the PKG_CONFIG_PATH environment variable
No package 'freetype2' found
Package freetype2 was not found in the pkg-config search path.
Perhaps you should add the directory containing `freetype2.pc'
to the PKG_CONFIG_PATH environment variable
No package 'freetype2' found
Package freetype2 was not found in the pkg-config search path.
Perhaps you should add the directory containing `freetype2.pc'
to the PKG_CONFIG_PATH environment variable
No package 'freetype2' found
Package freetype2 was not found in the pkg-config search path.
Perhaps you should add the directory containing `freetype2.pc'
to the PKG_CONFIG_PATH environment variable
No package 'freetype2' found
sed: -e expression #1, char 0: no previous regular expression
sed: -e expression #1, char 0: no previous regular expression
Package freetype2 was not found in the pkg-config search path.
Perhaps you should add the directory containing `freetype2.pc'
to the PKG_CONFIG_PATH environment variable
No package 'freetype2' found
Package freetype2 was not found in the pkg-config search path.
Perhaps you should add the directory containing `freetype2.pc'
to the PKG_CONFIG_PATH environment variable
No package 'freetype2' found
Package freetype2 was not found in the pkg-config search path.
Perhaps you should add the directory containing `freetype2.pc'
to the PKG_CONFIG_PATH environment variable
No package 'freetype2' found
Package freetype2 was not found in the pkg-config search path.
Perhaps you should add the directory containing `freetype2.pc'
to the PKG_CONFIG_PATH environment variable
No package 'freetype2' found
Package freetype2 was not found in the pkg-config search path.
Perhaps you should add the directory containing `freetype2.pc'
to the PKG_CONFIG_PATH environment variable
No package 'freetype2' found
Package freetype2 was not found in the pkg-config search path.
Perhaps you should add the directory containing `freetype2.pc'
to the PKG_CONFIG_PATH environment variable
No package 'freetype2' found
Package freetype2 was not found in the pkg-config search path.
Perhaps you should add the directory containing `freetype2.pc'
to the PKG_CONFIG_PATH environment variable
No package 'freetype2' found
Package freetype2 was not found in the pkg-config search path.
Perhaps you should add the directory containing `freetype2.pc'
to the PKG_CONFIG_PATH environment variable
No package 'freetype2' found
sed: -e expression #1, char 0: no previous regular expression
sed: -e expression #1, char 0: no previous regular expression
sed: -e expression #1, char 0: no previous regular expression
checking for FONTCONFIG... no
configure: WARNING: pkg-config did not find a fontconfig.pc. Looking for fontconfig-config.
checking for fontconfig-config... no
configure: WARNING: fontconfig library not available
checking for GDK... no
checking for GDK_PIXBUF... no
checking for GTK... no
checking for GTKGL... no
checking for GTKGLEXT... no
checking for GTS... no
checking for ANN... no
checking for GLADE... no
checking for qmake-qt5... no
checking for qmake5... no
checking for qmake... qmake
checking for QTCORE... no
checking for GDLIB... no
checking for gdlib-config... no
configure: WARNING: GD neither gdlib pkgconfig nor gdlib-config was found
checking gd.h usability... no
checking gd.h presence... no
checking for gd.h... no
configure: WARNING: Optional GD library not available - no gd.h
checking GL/glut.h usability... no
checking GL/glut.h presence... no
checking for GL/glut.h... no
configure: WARNING: Optional glut library not available - no GL/glut.h
configure: WARNING: SMYRNA requires GTK
configure: WARNING: SMYRNA requires GTKGLEXT
configure: WARNING: SMYRNA requires GLADE
configure: WARNING: SMYRNA requires GTS
configure: WARNING: SMYRNA requires GLUT
checking if FILE struct contains _cnt... no
checking if FILE struct contains _r... no
checking if FILE struct contains _next... no
checking if FILE struct contains _IO_read_end... yes
checking if intptr_t is declared... yes
checking for main in -lcriterion... no
configure: WARNING: Criterion unit testing framework not installed
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating debian/changelog
config.status: creating doc/Makefile
config.status: creating doc/info/Makefile
config.status: creating doc/schema/Makefile
config.status: creating contrib/Makefile
config.status: creating contrib/prune/Makefile
config.status: creating contrib/diffimg/Makefile
config.status: creating graphs/Makefile
config.status: creating graphs/directed/Makefile
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config.status: creating lib/Makefile
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config.status: creating lib/cdt/libcdt.pc
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config.status: creating lib/ast/Makefile
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config.status: creating lib/sfio/Sfio_f/Makefile
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config.status: creating lib/sfdpgen/libsfdp.pc
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config.status: creating macosx/Info.plist
config.status: creating macosx/build/graphviz.pmdoc/01local.xml
config.status: creating macosx/build/graphviz.pmdoc/02graphviz.xml
config.status: creating windows/build/graphviz.wxs
config.status: creating windows/Properties/AssemblyInfo.cs
config.status: creating plugin/Makefile
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config.status: executing libtool commands
=== configuring in libltdl (/home/yekyaw.thu/tool/graphviz/libltdl)
configure: running /bin/bash ./configure --disable-option-checking '--prefix=/usr/local' --cache-file=/dev/null --srcdir=.
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether make supports nested variables... (cached) yes
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking how to print strings... printf
checking whether make supports the include directive... yes (GNU style)
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... gcc3
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /usr/bin/dd
checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1
checking for mt... mt
checking if mt is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for shl_load... no
checking for shl_load in -ldld... no
checking for dlopen... no
checking for dlopen in -ldl... yes
checking whether a program can dlopen itself... yes
checking whether a statically linked program can dlopen itself... no
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking what extension is used for runtime loadable modules... .so
checking what variable specifies run-time module search path... LD_LIBRARY_PATH
checking for the default library search path... /lib /usr/lib /usr/local/cuda/targets/x86_64-linux/lib /usr/local/cuda-11/targets/x86_64-linux/lib /usr/lib/x86_64-linux-gnu/libfakeroot /usr/local/cuda-11.4/targets/x86_64-linux/lib /opt/intel/lib/intel64 /opt/intel/mkl/lib/intel64 /usr/local/lib /usr/local/lib/x86_64-linux-gnu /lib/x86_64-linux-gnu /usr/lib/x86_64-linux-gnu
checking for library containing dlopen... -ldl
checking for dlerror... yes
checking for shl_load... (cached) no
checking for shl_load in -ldld... (cached) no
checking for dld_link in -ldld... no
checking for _ prefix in compiled symbols... no
checking whether deplibs are loaded by dlopen... yes
checking for argz.h... yes
checking for error_t... yes
checking for argz_add... yes
checking for argz_append... yes
checking for argz_count... yes
checking for argz_create_sep... yes
checking for argz_insert... yes
checking for argz_next... yes
checking for argz_stringify... yes
checking if argz actually works... yes
checking whether libtool supports -dlopen/-dlpreopen... yes
checking for unistd.h... (cached) yes
checking for dl.h... no
checking for sys/dl.h... no
checking for dld.h... no
checking for mach-o/dyld.h... no
checking for dirent.h... yes
checking for closedir... yes
checking for opendir... yes
checking for readdir... yes
checking for strlcat... no
checking for strlcpy... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
----------------------------------------------------------------
graphviz-7.0.2~dev.20221117.0557 will be compiled with the following:
options:
cgraph: Yes (always enabled)
digcola: Yes
expat: Yes
fontconfig: No (missing fontconfig-config)
freetype: Yes
glut: No (missing GL/glut.h)
ann: No (no ann.pc found)
gts: No (gts library not available)
ipsepcola: Yes
ltdl: Yes
ortho: Yes
sfdp: Yes
swig: No (swig not available) ( )
shared: Yes
static: No (disabled by default)
qt: No (QtCore not available)
x: Yes
commands:
dot: Yes (always enabled)
neato: Yes (always enabled)
fdp: Yes (always enabled)
circo: Yes (always enabled)
twopi: Yes (always enabled)
gvpr: Yes (always enabled)
gvmap: Yes (always enabled)
smyrna: No (requires: gtk+ gtkglext glade gts glut)
gvedit: No (QtCore not available)
plugin libraries:
dot_layout: Yes (always enabled)
neato_layout: Yes (always enabled)
core: Yes (always enabled)
devil: No (missing library)
gd: No (gd headers not found)
gdiplus: No (disabled by default - Windows only)
gdk: No (gdk library not available)
gdk_pixbuf: No (gdk_pixbuf library not available)
ghostscript: No (missing Xrender)
gtk: No (gtk library not available)
lasi: No (missing pangocairo support)
pangocairo: No (pangocairo library not available)
poppler: No (poppler library not available)
quartz: No (disabled by default - Mac only)
rsvg: No (rsvg library not available)
visio: Yes
webp: No (webp library not available)
xlib: Yes
language extensions:
gv_sharp: No (swig not available)
gv_d: No (disabled by default - incomplete)
gv_go: No (swig not available)
gv_guile: No (swig not available)
gv_io: No (disabled by default - no swig support yet)
gv_java: No (swig not available)
gv_javascript: No (disabled by default - incomplete)
gv_lua: No (swig not available)
gv_ocaml: No (swig not available)
gv_perl: No (swig not available)
gv_php: No (swig not available)
gv_python: No (swig not available)
gv_python3: No (swig not available)
gv_R: No (swig not available)
gv_ruby: No (swig not available)
gv_tcl: No (tcl not available)
tcldot: No (tcl not available)
tclpathplan: No (tcl not available)
gdtclft: No (tcl not available)
Testing utilities:
criterion: No (Criterion unit testing framework not installed)
(vit) yekyaw.thu@gpu:~/tool/graphviz$
When I run "make", I got following errors:
xdot.c:941:18: warning: conversion from ‘double’ to ‘float’ may change value [-Wfloat-conversion]
941 | stops[i].frac = d;
| ^
CCLD libxdot.la
CCLD libxdot_C.la
rm -f xdot.3.pdf; pdffile=xdot.3.pdf; psfile=${pdffile%pdf}ps; \
groff -Tps -man xdot.3 > $psfile || { rm -f $psfile; exit 1; }; \
ps2pdf $psfile && rm -f $psfile || { rm -f $psfile; exit 1; }
make[3]: Leaving directory '/home/yekyaw.thu/tool/graphviz/lib/xdot'
Making all in cgraph
make[3]: Entering directory '/home/yekyaw.thu/tool/graphviz/lib/cgraph'
CC agerror.lo
CC apply.lo
CC attr.lo
CC edge.lo
CC flatten.lo
CC graph.lo
yacc -Wno-yacc -dv --output=grammar.c ../../lib/cgraph/grammar.y
/bin/bash: yacc: command not found
make[3]: *** [Makefile:1154: grammar.c] Error 127
make[3]: Leaving directory '/home/yekyaw.thu/tool/graphviz/lib/cgraph'
make[2]: *** [Makefile:582: all-recursive] Error 1
make[2]: Leaving directory '/home/yekyaw.thu/tool/graphviz/lib'
make[1]: *** [Makefile:798: all-recursive] Error 1
make[1]: Leaving directory '/home/yekyaw.thu/tool/graphviz'
make: *** [Makefile:627: all] Error 2
(vit) yekyaw.thu@gpu:~/tool/graphviz$
I think this is the main error ===> "/bin/bash: yacc: command not found" ?!
And thus, for this time, I install bison with conda ...
(vit) yekyaw.thu@gpu:~/tool/graphviz$ conda install bison
Collecting package metadata (current_repodata.json): done
Solving environment: -
The environment is inconsistent, please check the package plan carefully
The following packages are causing the inconsistency:
- defaults/linux-64::libxml2==2.9.14=h74e7548_0
- defaults/noarch::argon2-cffi==21.3.0=pyhd3eb1b0_0
- defaults/linux-64::tornado==6.2=py38h5eee18b_0
- defaults/noarch::bleach==4.1.0=pyhd3eb1b0_0
- defaults/noarch::send2trash==1.8.0=pyhd3eb1b0_1
- defaults/linux-64::pysocks==1.7.1=py38h06a4308_0
- defaults/noarch::prompt-toolkit==3.0.20=pyhd3eb1b0_0
- defaults/linux-64::freetype==2.12.1=h4a9f257_0
- defaults/linux-64::sniffio==1.2.0=py38h06a4308_1
- defaults/linux-64::libedit==3.1.20210910=h7f8727e_0
- defaults/linux-64::libwebp-base==1.2.4=h5eee18b_0
- defaults/noarch::pygments==2.11.2=pyhd3eb1b0_0
- defaults/linux-64::entrypoints==0.4=py38h06a4308_0
- defaults/linux-64::jpeg==9e=h7f8727e_0
- defaults/linux-64::brotlipy==0.7.0=py38h27cfd23_1003
- defaults/linux-64::qt-webengine==5.15.9=hd2b0992_4
- defaults/linux-64::idna==3.4=py38h06a4308_0
- defaults/linux-64::argon2-cffi-bindings==21.2.0=py38h7f8727e_0
- defaults/linux-64::typing_extensions==4.3.0=py38h06a4308_0
- defaults/linux-64::qtconsole==5.3.2=py38h06a4308_0
- defaults/noarch::prompt_toolkit==3.0.20=hd3eb1b0_0
- defaults/linux-64::tk==8.6.12=h1ccaba5_0
- defaults/linux-64::gst-plugins-base==1.14.0=h8213a91_2
- defaults/noarch::pexpect==4.8.0=pyhd3eb1b0_3
- defaults/noarch::six==1.16.0=pyhd3eb1b0_1
- defaults/noarch::toml==0.10.2=pyhd3eb1b0_0
- defaults/linux-64::soupsieve==2.3.2.post1=py38h06a4308_0
- defaults/noarch::ipython_genutils==0.2.0=pyhd3eb1b0_1
- defaults/linux-64::libxcb==1.15=h7f8727e_0
- defaults/linux-64::ncurses==6.3=h5eee18b_3
- defaults/linux-64::jinja2==3.1.2=py38h06a4308_0
- defaults/linux-64::cryptography==38.0.1=py38h9ce1e76_0
- defaults/noarch::pandocfilters==1.5.0=pyhd3eb1b0_0
- defaults/noarch::jupyter_console==6.4.3=pyhd3eb1b0_0
- defaults/linux-64::mistune==0.8.4=py38h7b6447c_1000
- defaults/linux-64::pyzmq==23.2.0=py38h6a678d5_0
- defaults/linux-64::nbconvert==6.5.4=py38h06a4308_0
- defaults/linux-64::matplotlib-inline==0.1.6=py38h06a4308_0
- defaults/linux-64::notebook==6.5.2=py38h06a4308_0
- defaults/linux-64::nbformat==5.5.0=py38h06a4308_0
- defaults/noarch::babel==2.9.1=pyhd3eb1b0_0
- defaults/linux-64::icu==58.2=he6710b0_3
- defaults/linux-64::sip==6.6.2=py38h6a678d5_0
- defaults/noarch::jupyterlab_pygments==0.1.2=py_0
- defaults/linux-64::requests==2.28.1=py38h06a4308_0
- defaults/noarch::parso==0.8.3=pyhd3eb1b0_0
- defaults/linux-64::notebook-shim==0.2.2=py38h06a4308_0
- defaults/linux-64::ipython==8.6.0=py38h06a4308_0
- defaults/linux-64::zeromq==4.3.4=h2531618_0
- defaults/linux-64::beautifulsoup4==4.11.1=py38h06a4308_0
- defaults/linux-64::psutil==5.9.0=py38h5eee18b_0
- defaults/linux-64::websocket-client==0.58.0=py38h06a4308_4
- defaults/linux-64::gstreamer==1.14.0=h28cd5cc_2
- defaults/linux-64::nbclassic==0.4.8=py38h06a4308_0
- defaults/linux-64::setuptools==65.5.0=py38h06a4308_0
- defaults/noarch::jupyterlab_widgets==1.0.0=pyhd3eb1b0_1
- defaults/noarch::packaging==21.3=pyhd3eb1b0_0
- defaults/linux-64::markupsafe==2.1.1=py38h7f8727e_0
- defaults/noarch::ptyprocess==0.7.0=pyhd3eb1b0_2
- defaults/noarch::pure_eval==0.2.2=pyhd3eb1b0_0
- defaults/linux-64::qtwebkit==5.212=h4eab89a_4
- defaults/linux-64::libclang==10.0.1=default_hb85057a_2
- defaults/linux-64::nest-asyncio==1.5.5=py38h06a4308_0
- defaults/linux-64::libuuid==1.41.5=h5eee18b_0
- defaults/linux-64::pyrsistent==0.18.0=py38heee7806_0
- defaults/linux-64::cffi==1.15.1=py38h74dc2b5_0
- defaults/linux-64::nspr==4.33=h295c915_0
- defaults/linux-64::libwebp==1.2.4=h11a3e52_0
- defaults/linux-64::nbclient==0.5.13=py38h06a4308_0
- defaults/linux-64::pyparsing==3.0.9=py38h06a4308_0
- defaults/linux-64::python-fastjsonschema==2.16.2=py38h06a4308_0
- defaults/noarch::stack_data==0.2.0=pyhd3eb1b0_0
- defaults/linux-64::fontconfig==2.13.1=hef1e5e3_1
- defaults/linux-64::xz==5.2.6=h5eee18b_0
- defaults/linux-64::jupyterlab_server==2.15.2=py38h06a4308_0
- defaults/noarch::defusedxml==0.7.1=pyhd3eb1b0_0
- defaults/linux-64::giflib==5.2.1=h7b6447c_0
- defaults/linux-64::pcre==8.45=h295c915_0
- defaults/linux-64::pip==22.2.2=py38h06a4308_0
- defaults/linux-64::libpng==1.6.37=hbc83047_0
- defaults/noarch::pyopenssl==22.0.0=pyhd3eb1b0_0
- defaults/linux-64::zlib==1.2.13=h5eee18b_0
- defaults/linux-64::dbus==1.13.18=hb2f20db_0
- defaults/linux-64::jupyter==1.0.0=py38h06a4308_8
- defaults/linux-64::zstd==1.5.2=ha4553b6_0
- defaults/noarch::traitlets==5.1.1=pyhd3eb1b0_0
- defaults/linux-64::tinycss2==1.2.1=py38h06a4308_0
- defaults/linux-64::libgcc-ng==11.2.0=h1234567_1
- defaults/linux-64::libllvm10==10.0.1=hbcb73fb_5
- defaults/linux-64::lxml==4.9.1=py38h1edc446_0
- defaults/noarch::pycparser==2.21=pyhd3eb1b0_0
- defaults/linux-64::libtiff==4.4.0=hecacb30_2
- defaults/linux-64::jsonschema==4.16.0=py38h06a4308_0
- defaults/linux-64::ply==3.11=py38_0
- defaults/linux-64::libxkbcommon==1.0.1=hfa300c1_0
- defaults/linux-64::pytz==2022.1=py38h06a4308_0
- defaults/linux-64::ipykernel==6.15.2=py38h06a4308_0
- defaults/noarch::attrs==21.4.0=pyhd3eb1b0_0
- defaults/linux-64::pkgutil-resolve-name==1.3.10=py38h06a4308_0
- defaults/linux-64::zipp==3.8.0=py38h06a4308_0
- defaults/linux-64::openssl==1.1.1s=h7f8727e_0
- defaults/linux-64::pyqt==5.15.7=py38h6a678d5_1
- defaults/noarch::asttokens==2.0.5=pyhd3eb1b0_0
- defaults/linux-64::jupyter_client==7.3.5=py38h06a4308_0
- defaults/linux-64::prometheus_client==0.14.1=py38h06a4308_0
- defaults/linux-64::qtpy==2.2.0=py38h06a4308_0
- defaults/noarch::wcwidth==0.2.5=pyhd3eb1b0_0
- defaults/linux-64::jedi==0.18.1=py38h06a4308_1
- defaults/linux-64::jupyter_core==4.11.2=py38h06a4308_0
- defaults/linux-64::pyqt5-sip==12.11.0=py38h6a678d5_1
- defaults/linux-64::nss==3.74=h0370c37_0
- defaults/linux-64::libevent==2.1.12=h8f2d780_0
- defaults/noarch::charset-normalizer==2.0.4=pyhd3eb1b0_0
- defaults/linux-64::typing-extensions==4.3.0=py38h06a4308_0
- defaults/linux-64::python==3.8.13=haa1d7c7_1
- defaults/noarch::executing==0.8.3=pyhd3eb1b0_0
- defaults/linux-64::lerc==3.0=h295c915_0
- defaults/linux-64::readline==8.2=h5eee18b_0
- defaults/linux-64::krb5==1.19.2=hac12032_0
- defaults/noarch::backcall==0.2.0=pyhd3eb1b0_0
- defaults/noarch::decorator==5.1.1=pyhd3eb1b0_0
- defaults/noarch::pickleshare==0.7.5=pyhd3eb1b0_1003
- defaults/linux-64::importlib-metadata==4.11.3=py38h06a4308_0
- defaults/linux-64::glib==2.69.1=h4ff587b_1
- defaults/linux-64::widgetsnbextension==3.5.2=py38h06a4308_0
- defaults/linux-64::libsodium==1.0.18=h7b6447c_0
- defaults/linux-64::lz4-c==1.9.3=h295c915_1
- defaults/noarch::json5==0.9.6=pyhd3eb1b0_0
- defaults/linux-64::libffi==3.3=he6710b0_2
- defaults/linux-64::terminado==0.13.1=py38h06a4308_0
- defaults/noarch::python-dateutil==2.8.2=pyhd3eb1b0_0
- defaults/linux-64::webencodings==0.5.1=py38_1
- defaults/linux-64::libxslt==1.1.35=h4e12654_0
- defaults/linux-64::libpq==12.9=h16c4e8d_3
- defaults/linux-64::anyio==3.5.0=py38h06a4308_0
- defaults/linux-64::libdeflate==1.8=h7f8727e_5
- defaults/linux-64::urllib3==1.26.12=py38h06a4308_0
- defaults/noarch::ipywidgets==7.6.5=pyhd3eb1b0_1
- defaults/linux-64::sqlite==3.39.3=h5082296_0
- defaults/linux-64::certifi==2022.9.24=py38h06a4308_0
- defaults/linux-64::expat==2.4.9=h6a678d5_0
- defaults/linux-64::libstdcxx-ng==11.2.0=h1234567_1
- defaults/noarch::wheel==0.37.1=pyhd3eb1b0_0
- defaults/linux-64::qt-main==5.15.2=h327a75a_7
- defaults/noarch::importlib_resources==5.2.0=pyhd3eb1b0_1
- defaults/linux-64::debugpy==1.5.1=py38h295c915_0
- defaults/linux-64::jupyter_server==1.18.1=py38h06a4308_0
- defaults/linux-64::jupyterlab==3.4.4=py38h06a4308_0
done
==> WARNING: A newer version of conda exists. <==
current version: 4.8.2
latest version: 22.9.0
Please update conda by running
$ conda update -n base -c defaults conda
## Package Plan ##
environment location: /home/yekyaw.thu/.conda/envs/vit
added / updated specs:
- bison
The following packages will be downloaded:
package | build
---------------------------|-----------------
bison-3.7.5 | h2531618_1 708 KB
flex-2.6.4 | ha10e3a4_1 308 KB
m4-1.4.18 | h4e445db_0 182 KB
------------------------------------------------------------
Total: 1.2 MB
The following NEW packages will be INSTALLED:
bison pkgs/main/linux-64::bison-3.7.5-h2531618_1
flex pkgs/main/linux-64::flex-2.6.4-ha10e3a4_1
m4 pkgs/main/linux-64::m4-1.4.18-h4e445db_0
Proceed ([y]/n)? y
Downloading and Extracting Packages
m4-1.4.18 | 182 KB | ############################################################################# | 100%
bison-3.7.5 | 708 KB | ############################################################################# | 100%
flex-2.6.4 | 308 KB | ############################################################################# | 100%
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
(vit) yekyaw.thu@gpu:~/tool/graphviz$
After the above installation, I did "flex" installation with conda ...
(vit) yekyaw.thu@gpu:~/tool/graphviz$ conda install flex
Collecting package metadata (current_repodata.json): done
Solving environment: -
The environment is inconsistent, please check the package plan carefully
The following packages are causing the inconsistency:
- defaults/linux-64::libxml2==2.9.14=h74e7548_0
- defaults/noarch::argon2-cffi==21.3.0=pyhd3eb1b0_0
- defaults/linux-64::m4==1.4.18=h4e445db_0
- defaults/linux-64::tornado==6.2=py38h5eee18b_0
- defaults/noarch::bleach==4.1.0=pyhd3eb1b0_0
- defaults/noarch::send2trash==1.8.0=pyhd3eb1b0_1
- defaults/linux-64::pysocks==1.7.1=py38h06a4308_0
- defaults/noarch::prompt-toolkit==3.0.20=pyhd3eb1b0_0
- defaults/linux-64::freetype==2.12.1=h4a9f257_0
- defaults/linux-64::sniffio==1.2.0=py38h06a4308_1
- defaults/linux-64::libedit==3.1.20210910=h7f8727e_0
- defaults/linux-64::libwebp-base==1.2.4=h5eee18b_0
- defaults/noarch::pygments==2.11.2=pyhd3eb1b0_0
- defaults/linux-64::entrypoints==0.4=py38h06a4308_0
- defaults/linux-64::jpeg==9e=h7f8727e_0
- defaults/linux-64::brotlipy==0.7.0=py38h27cfd23_1003
- defaults/linux-64::qt-webengine==5.15.9=hd2b0992_4
- defaults/linux-64::idna==3.4=py38h06a4308_0
- defaults/linux-64::argon2-cffi-bindings==21.2.0=py38h7f8727e_0
- defaults/linux-64::typing_extensions==4.3.0=py38h06a4308_0
- defaults/linux-64::qtconsole==5.3.2=py38h06a4308_0
- defaults/noarch::prompt_toolkit==3.0.20=hd3eb1b0_0
- defaults/linux-64::tk==8.6.12=h1ccaba5_0
- defaults/linux-64::gst-plugins-base==1.14.0=h8213a91_2
- defaults/noarch::pexpect==4.8.0=pyhd3eb1b0_3
- defaults/noarch::six==1.16.0=pyhd3eb1b0_1
- defaults/noarch::toml==0.10.2=pyhd3eb1b0_0
- defaults/linux-64::soupsieve==2.3.2.post1=py38h06a4308_0
- defaults/noarch::ipython_genutils==0.2.0=pyhd3eb1b0_1
- defaults/linux-64::libxcb==1.15=h7f8727e_0
- defaults/linux-64::bison==3.7.5=h2531618_1
- defaults/linux-64::ncurses==6.3=h5eee18b_3
- defaults/linux-64::jinja2==3.1.2=py38h06a4308_0
- defaults/linux-64::cryptography==38.0.1=py38h9ce1e76_0
- defaults/noarch::pandocfilters==1.5.0=pyhd3eb1b0_0
- defaults/noarch::jupyter_console==6.4.3=pyhd3eb1b0_0
- defaults/linux-64::mistune==0.8.4=py38h7b6447c_1000
- defaults/linux-64::pyzmq==23.2.0=py38h6a678d5_0
- defaults/linux-64::nbconvert==6.5.4=py38h06a4308_0
- defaults/linux-64::matplotlib-inline==0.1.6=py38h06a4308_0
- defaults/linux-64::notebook==6.5.2=py38h06a4308_0
- defaults/linux-64::nbformat==5.5.0=py38h06a4308_0
- defaults/noarch::babel==2.9.1=pyhd3eb1b0_0
- defaults/linux-64::icu==58.2=he6710b0_3
- defaults/linux-64::sip==6.6.2=py38h6a678d5_0
- defaults/noarch::jupyterlab_pygments==0.1.2=py_0
- defaults/linux-64::requests==2.28.1=py38h06a4308_0
- defaults/noarch::parso==0.8.3=pyhd3eb1b0_0
- defaults/linux-64::notebook-shim==0.2.2=py38h06a4308_0
- defaults/linux-64::ipython==8.6.0=py38h06a4308_0
- defaults/linux-64::zeromq==4.3.4=h2531618_0
- defaults/linux-64::beautifulsoup4==4.11.1=py38h06a4308_0
- defaults/linux-64::psutil==5.9.0=py38h5eee18b_0
- defaults/linux-64::websocket-client==0.58.0=py38h06a4308_4
- defaults/linux-64::gstreamer==1.14.0=h28cd5cc_2
- defaults/linux-64::nbclassic==0.4.8=py38h06a4308_0
- defaults/linux-64::setuptools==65.5.0=py38h06a4308_0
- defaults/noarch::jupyterlab_widgets==1.0.0=pyhd3eb1b0_1
- defaults/noarch::packaging==21.3=pyhd3eb1b0_0
- defaults/linux-64::markupsafe==2.1.1=py38h7f8727e_0
- defaults/noarch::ptyprocess==0.7.0=pyhd3eb1b0_2
- defaults/noarch::pure_eval==0.2.2=pyhd3eb1b0_0
- defaults/linux-64::qtwebkit==5.212=h4eab89a_4
- defaults/linux-64::libclang==10.0.1=default_hb85057a_2
- defaults/linux-64::nest-asyncio==1.5.5=py38h06a4308_0
- defaults/linux-64::libuuid==1.41.5=h5eee18b_0
- defaults/linux-64::pyrsistent==0.18.0=py38heee7806_0
- defaults/linux-64::cffi==1.15.1=py38h74dc2b5_0
- defaults/linux-64::nspr==4.33=h295c915_0
- defaults/linux-64::libwebp==1.2.4=h11a3e52_0
- defaults/linux-64::nbclient==0.5.13=py38h06a4308_0
- defaults/linux-64::pyparsing==3.0.9=py38h06a4308_0
- defaults/linux-64::python-fastjsonschema==2.16.2=py38h06a4308_0
- defaults/noarch::stack_data==0.2.0=pyhd3eb1b0_0
- defaults/linux-64::fontconfig==2.13.1=hef1e5e3_1
- defaults/linux-64::xz==5.2.6=h5eee18b_0
- defaults/linux-64::jupyterlab_server==2.15.2=py38h06a4308_0
- defaults/noarch::defusedxml==0.7.1=pyhd3eb1b0_0
- defaults/linux-64::giflib==5.2.1=h7b6447c_0
- defaults/linux-64::pcre==8.45=h295c915_0
- defaults/linux-64::pip==22.2.2=py38h06a4308_0
- defaults/linux-64::libpng==1.6.37=hbc83047_0
- defaults/noarch::pyopenssl==22.0.0=pyhd3eb1b0_0
- defaults/linux-64::zlib==1.2.13=h5eee18b_0
- defaults/linux-64::dbus==1.13.18=hb2f20db_0
- defaults/linux-64::jupyter==1.0.0=py38h06a4308_8
- defaults/linux-64::zstd==1.5.2=ha4553b6_0
- defaults/noarch::traitlets==5.1.1=pyhd3eb1b0_0
- defaults/linux-64::tinycss2==1.2.1=py38h06a4308_0
- defaults/linux-64::libgcc-ng==11.2.0=h1234567_1
- defaults/linux-64::libllvm10==10.0.1=hbcb73fb_5
- defaults/linux-64::lxml==4.9.1=py38h1edc446_0
- defaults/noarch::pycparser==2.21=pyhd3eb1b0_0
- defaults/linux-64::libtiff==4.4.0=hecacb30_2
- defaults/linux-64::jsonschema==4.16.0=py38h06a4308_0
- defaults/linux-64::ply==3.11=py38_0
- defaults/linux-64::libxkbcommon==1.0.1=hfa300c1_0
- defaults/linux-64::pytz==2022.1=py38h06a4308_0
- defaults/linux-64::ipykernel==6.15.2=py38h06a4308_0
- defaults/noarch::attrs==21.4.0=pyhd3eb1b0_0
- defaults/linux-64::pkgutil-resolve-name==1.3.10=py38h06a4308_0
- defaults/linux-64::zipp==3.8.0=py38h06a4308_0
- defaults/linux-64::openssl==1.1.1s=h7f8727e_0
- defaults/linux-64::pyqt==5.15.7=py38h6a678d5_1
- defaults/noarch::asttokens==2.0.5=pyhd3eb1b0_0
- defaults/linux-64::jupyter_client==7.3.5=py38h06a4308_0
- defaults/linux-64::prometheus_client==0.14.1=py38h06a4308_0
- defaults/linux-64::qtpy==2.2.0=py38h06a4308_0
- defaults/noarch::wcwidth==0.2.5=pyhd3eb1b0_0
- defaults/linux-64::jedi==0.18.1=py38h06a4308_1
- defaults/linux-64::jupyter_core==4.11.2=py38h06a4308_0
- defaults/linux-64::pyqt5-sip==12.11.0=py38h6a678d5_1
- defaults/linux-64::nss==3.74=h0370c37_0
- defaults/linux-64::libevent==2.1.12=h8f2d780_0
- defaults/noarch::charset-normalizer==2.0.4=pyhd3eb1b0_0
- defaults/linux-64::typing-extensions==4.3.0=py38h06a4308_0
- defaults/linux-64::python==3.8.13=haa1d7c7_1
- defaults/noarch::executing==0.8.3=pyhd3eb1b0_0
- defaults/linux-64::lerc==3.0=h295c915_0
- defaults/linux-64::readline==8.2=h5eee18b_0
- defaults/linux-64::krb5==1.19.2=hac12032_0
- defaults/noarch::backcall==0.2.0=pyhd3eb1b0_0
- defaults/noarch::decorator==5.1.1=pyhd3eb1b0_0
- defaults/noarch::pickleshare==0.7.5=pyhd3eb1b0_1003
- defaults/linux-64::importlib-metadata==4.11.3=py38h06a4308_0
- defaults/linux-64::glib==2.69.1=h4ff587b_1
- defaults/linux-64::widgetsnbextension==3.5.2=py38h06a4308_0
- defaults/linux-64::flex==2.6.4=ha10e3a4_1
- defaults/linux-64::libsodium==1.0.18=h7b6447c_0
- defaults/linux-64::lz4-c==1.9.3=h295c915_1
- defaults/noarch::json5==0.9.6=pyhd3eb1b0_0
- defaults/linux-64::libffi==3.3=he6710b0_2
- defaults/linux-64::terminado==0.13.1=py38h06a4308_0
- defaults/noarch::python-dateutil==2.8.2=pyhd3eb1b0_0
- defaults/linux-64::webencodings==0.5.1=py38_1
- defaults/linux-64::libxslt==1.1.35=h4e12654_0
- defaults/linux-64::libpq==12.9=h16c4e8d_3
- defaults/linux-64::anyio==3.5.0=py38h06a4308_0
- defaults/linux-64::libdeflate==1.8=h7f8727e_5
- defaults/linux-64::urllib3==1.26.12=py38h06a4308_0
- defaults/noarch::ipywidgets==7.6.5=pyhd3eb1b0_1
- defaults/linux-64::sqlite==3.39.3=h5082296_0
- defaults/linux-64::certifi==2022.9.24=py38h06a4308_0
- defaults/linux-64::expat==2.4.9=h6a678d5_0
- defaults/linux-64::libstdcxx-ng==11.2.0=h1234567_1
- defaults/noarch::wheel==0.37.1=pyhd3eb1b0_0
- defaults/linux-64::qt-main==5.15.2=h327a75a_7
- defaults/noarch::importlib_resources==5.2.0=pyhd3eb1b0_1
- defaults/linux-64::debugpy==1.5.1=py38h295c915_0
- defaults/linux-64::jupyter_server==1.18.1=py38h06a4308_0
- defaults/linux-64::jupyterlab==3.4.4=py38h06a4308_0
done
==> WARNING: A newer version of conda exists. <==
current version: 4.8.2
latest version: 22.9.0
Please update conda by running
$ conda update -n base -c defaults conda
# All requested packages already installed.
(vit) yekyaw.thu@gpu:~/tool/graphviz$
Run "make" again and for this time no error! Great! :)
(vit) yekyaw.thu@gpu:~/tool/graphviz$ make
...
...
...
make[3]: Leaving directory '/home/yekyaw.thu/tool/graphviz/share'
make[2]: Leaving directory '/home/yekyaw.thu/tool/graphviz/share'
Making all in graphs
make[2]: Entering directory '/home/yekyaw.thu/tool/graphviz/graphs'
Making all in directed
make[3]: Entering directory '/home/yekyaw.thu/tool/graphviz/graphs/directed'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/home/yekyaw.thu/tool/graphviz/graphs/directed'
Making all in undirected
make[3]: Entering directory '/home/yekyaw.thu/tool/graphviz/graphs/undirected'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/home/yekyaw.thu/tool/graphviz/graphs/undirected'
make[3]: Entering directory '/home/yekyaw.thu/tool/graphviz/graphs'
make[3]: Nothing to be done for 'all-am'.
make[3]: Leaving directory '/home/yekyaw.thu/tool/graphviz/graphs'
make[2]: Leaving directory '/home/yekyaw.thu/tool/graphviz/graphs'
Making all in tests
make[2]: Entering directory '/home/yekyaw.thu/tool/graphviz/tests'
Making all in graphs
make[3]: Entering directory '/home/yekyaw.thu/tool/graphviz/tests/graphs'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/home/yekyaw.thu/tool/graphviz/tests/graphs'
Making all in linux.x86
make[3]: Entering directory '/home/yekyaw.thu/tool/graphviz/tests/linux.x86'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/home/yekyaw.thu/tool/graphviz/tests/linux.x86'
Making all in unit_tests
make[3]: Entering directory '/home/yekyaw.thu/tool/graphviz/tests/unit_tests'
Making all in lib
make[4]: Entering directory '/home/yekyaw.thu/tool/graphviz/tests/unit_tests/lib'
Making all in common
make[5]: Entering directory '/home/yekyaw.thu/tool/graphviz/tests/unit_tests/lib/common'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/home/yekyaw.thu/tool/graphviz/tests/unit_tests/lib/common'
make[5]: Entering directory '/home/yekyaw.thu/tool/graphviz/tests/unit_tests/lib'
make[5]: Nothing to be done for 'all-am'.
make[5]: Leaving directory '/home/yekyaw.thu/tool/graphviz/tests/unit_tests/lib'
make[4]: Leaving directory '/home/yekyaw.thu/tool/graphviz/tests/unit_tests/lib'
make[4]: Entering directory '/home/yekyaw.thu/tool/graphviz/tests/unit_tests'
make[4]: Nothing to be done for 'all-am'.
make[4]: Leaving directory '/home/yekyaw.thu/tool/graphviz/tests/unit_tests'
make[3]: Leaving directory '/home/yekyaw.thu/tool/graphviz/tests/unit_tests'
Making all in regression_tests
make[3]: Entering directory '/home/yekyaw.thu/tool/graphviz/tests/regression_tests'
Making all in shapes
make[4]: Entering directory '/home/yekyaw.thu/tool/graphviz/tests/regression_tests/shapes'
Making all in reference
make[5]: Entering directory '/home/yekyaw.thu/tool/graphviz/tests/regression_tests/shapes/reference'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/home/yekyaw.thu/tool/graphviz/tests/regression_tests/shapes/reference'
make[5]: Entering directory '/home/yekyaw.thu/tool/graphviz/tests/regression_tests/shapes'
make[5]: Nothing to be done for 'all-am'.
make[5]: Leaving directory '/home/yekyaw.thu/tool/graphviz/tests/regression_tests/shapes'
make[4]: Leaving directory '/home/yekyaw.thu/tool/graphviz/tests/regression_tests/shapes'
Making all in vuln
make[4]: Entering directory '/home/yekyaw.thu/tool/graphviz/tests/regression_tests/vuln'
Making all in input
make[5]: Entering directory '/home/yekyaw.thu/tool/graphviz/tests/regression_tests/vuln/input'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/home/yekyaw.thu/tool/graphviz/tests/regression_tests/vuln/input'
Making all in reference
make[5]: Entering directory '/home/yekyaw.thu/tool/graphviz/tests/regression_tests/vuln/reference'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/home/yekyaw.thu/tool/graphviz/tests/regression_tests/vuln/reference'
make[5]: Entering directory '/home/yekyaw.thu/tool/graphviz/tests/regression_tests/vuln'
make[5]: Nothing to be done for 'all-am'.
make[5]: Leaving directory '/home/yekyaw.thu/tool/graphviz/tests/regression_tests/vuln'
make[4]: Leaving directory '/home/yekyaw.thu/tool/graphviz/tests/regression_tests/vuln'
make[4]: Entering directory '/home/yekyaw.thu/tool/graphviz/tests/regression_tests'
make[4]: Nothing to be done for 'all-am'.
make[4]: Leaving directory '/home/yekyaw.thu/tool/graphviz/tests/regression_tests'
make[3]: Leaving directory '/home/yekyaw.thu/tool/graphviz/tests/regression_tests'
make[3]: Entering directory '/home/yekyaw.thu/tool/graphviz/tests'
make[3]: Nothing to be done for 'all-am'.
make[3]: Leaving directory '/home/yekyaw.thu/tool/graphviz/tests'
make[2]: Leaving directory '/home/yekyaw.thu/tool/graphviz/tests'
make[2]: Entering directory '/home/yekyaw.thu/tool/graphviz'
make[2]: Leaving directory '/home/yekyaw.thu/tool/graphviz'
make[1]: Leaving directory '/home/yekyaw.thu/tool/graphviz'
(vit) yekyaw.thu@gpu:~/tool/graphviz$
now time for running "make install" ...
make[3]: Entering directory '/home/yekyaw.thu/tool/graphviz/libltdl'
make[4]: Entering directory '/home/yekyaw.thu/tool/graphviz/libltdl'
make[4]: Leaving directory '/home/yekyaw.thu/tool/graphviz/libltdl'
make[3]: Leaving directory '/home/yekyaw.thu/tool/graphviz/libltdl'
make[2]: Leaving directory '/home/yekyaw.thu/tool/graphviz/libltdl'
Making install in lib
make[2]: Entering directory '/home/yekyaw.thu/tool/graphviz/lib'
Making install in cdt
make[3]: Entering directory '/home/yekyaw.thu/tool/graphviz/lib/cdt'
make[4]: Entering directory '/home/yekyaw.thu/tool/graphviz/lib/cdt'
/usr/bin/mkdir -p '/usr/local/lib'
/bin/bash ../../libtool --mode=install /usr/bin/install -c libcdt.la '/usr/local/lib'
libtool: install: /usr/bin/install -c .libs/libcdt.so.5.0.0 /usr/local/lib/libcdt.so.5.0.0
/usr/bin/install: cannot create regular file '/usr/local/lib/libcdt.so.5.0.0': Permission denied
make[4]: *** [Makefile:637: install-libLTLIBRARIES] Error 1
make[4]: Leaving directory '/home/yekyaw.thu/tool/graphviz/lib/cdt'
make[3]: *** [Makefile:950: install-am] Error 2
make[3]: Leaving directory '/home/yekyaw.thu/tool/graphviz/lib/cdt'
make[2]: *** [Makefile:582: install-recursive] Error 1
make[2]: Leaving directory '/home/yekyaw.thu/tool/graphviz/lib'
make[1]: *** [Makefile:798: install-recursive] Error 1
make[1]: Leaving directory '/home/yekyaw.thu/tool/graphviz'
make: *** [Makefile:1101: install] Error 2
(vit) yekyaw.thu@gpu:~/tool/graphviz$
No sudo right ... and thus ... confirm again ...
(vit) yekyaw.thu@gpu:~/tool/graphviz$ pip3 install pydot graphviz
Requirement already satisfied: pydot in /home/yekyaw.thu/.conda/envs/vit/lib/python3.8/site-packages (1.4.2)
Requirement already satisfied: graphviz in /home/yekyaw.thu/.conda/envs/vit/lib/python3.8/site-packages (0.20.1)
Requirement already satisfied: pyparsing>=2.1.4 in /home/yekyaw.thu/.conda/envs/vit/lib/python3.8/site-packages (from pydot) (3.0.9)
(vit) yekyaw.thu@gpu:~/tool/graphviz$
I also did "pip uninstall pydot", "pip uninstall graphivz" and reinstall both libraries and also run "pip install pydotplus". However, still give following errors inside Jupyter when I run "tf.keras.utils.plot_model(ViT_model, rankdir='TB')":
You must install pydot (`pip install pydot`) and install graphviz (see instructions at https://graphviz.gitlab.io/download/) for plot_model to work.
I run "conda install pydot" and "conda install graphviz".
And restart Jupyter kernel and now draw the graph. OK!!! :)
Now training the ViT model ...
Every 2.0s: nvidia-smi gpu.cadt.edu.kh: Thu Nov 17 18:11:10 2022
Thu Nov 17 18:11:10 2022
+-----------------------------------------------------------------------------+
| NVIDIA-SMI 470.141.03 Driver Version: 470.141.03 CUDA Version: 11.4 |
|-------------------------------+----------------------+----------------------+
| GPU Name Persistence-M| Bus-Id Disp.A | Volatile Uncorr. ECC |
| Fan Temp Perf Pwr:Usage/Cap| Memory-Usage | GPU-Util Compute M. |
| | | MIG M. |
|===============================+======================+======================|
| 0 NVIDIA GeForce ... Off | 00000000:0A:00.0 Off | N/A |
| 81% 76C P2 206W / 300W | 10602MiB / 11019MiB | 67% Default |
| | | N/A |
+-------------------------------+----------------------+----------------------+
| 1 NVIDIA GeForce ... Off | 00000000:42:00.0 Off | N/A |
| 0% 52C P8 15W / 257W | 330MiB / 11019MiB | 0% Default |
| | | N/A |
+-------------------------------+----------------------+----------------------+
| 2 NVIDIA GeForce ... Off | 00000000:43:00.0 Off | N/A |
| 30% 43C P8 30W / 250W | 330MiB / 11016MiB | 0% Default |
| | | N/A |
+-------------------------------+----------------------+----------------------+
+-----------------------------------------------------------------------------+
| Processes: |
| GPU GI CI PID Type Process name GPU Memory |
| ID ID Usage |
|=============================================================================|
| 0 N/A N/A 318073 C ...conda/envs/vit/bin/python 10599MiB |
| 1 N/A N/A 318073 C ...conda/envs/vit/bin/python 327MiB |
| 2 N/A N/A 318073 C ...conda/envs/vit/bin/python 327MiB |
+-----------------------------------------------------------------------------+
I think the model finished between 20 min to 30 min.
Installation of seaborn python library ...
(vit) yekyaw.thu@gpu:~/tool/graphviz$ pip install seaborn
Collecting seaborn
Using cached seaborn-0.12.1-py3-none-any.whl (288 kB)
Requirement already satisfied: matplotlib!=3.6.1,>=3.1 in /home/yekyaw.thu/.conda/envs/vit/lib/python3.8/site-packages (from seaborn) (3.6.2)
Collecting pandas>=0.25
Downloading pandas-1.5.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (12.2 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 12.2/12.2 MB 987.1 kB/s eta 0:00:00
Requirement already satisfied: numpy>=1.17 in /home/yekyaw.thu/.conda/envs/vit/lib/python3.8/site-packages (from seaborn) (1.23.4)
Requirement already satisfied: kiwisolver>=1.0.1 in /home/yekyaw.thu/.conda/envs/vit/lib/python3.8/site-packages (from matplotlib!=3.6.1,>=3.1->seaborn) (1.4.4)
Requirement already satisfied: python-dateutil>=2.7 in /home/yekyaw.thu/.conda/envs/vit/lib/python3.8/site-packages (from matplotlib!=3.6.1,>=3.1->seaborn) (2.8.2)
Requirement already satisfied: fonttools>=4.22.0 in /home/yekyaw.thu/.conda/envs/vit/lib/python3.8/site-packages (from matplotlib!=3.6.1,>=3.1->seaborn) (4.38.0)
Requirement already satisfied: pyparsing>=2.2.1 in /home/yekyaw.thu/.conda/envs/vit/lib/python3.8/site-packages (from matplotlib!=3.6.1,>=3.1->seaborn) (3.0.9)
Requirement already satisfied: pillow>=6.2.0 in /home/yekyaw.thu/.conda/envs/vit/lib/python3.8/site-packages (from matplotlib!=3.6.1,>=3.1->seaborn) (9.3.0)
Requirement already satisfied: contourpy>=1.0.1 in /home/yekyaw.thu/.conda/envs/vit/lib/python3.8/site-packages (from matplotlib!=3.6.1,>=3.1->seaborn) (1.0.6)
Requirement already satisfied: cycler>=0.10 in /home/yekyaw.thu/.conda/envs/vit/lib/python3.8/site-packages (from matplotlib!=3.6.1,>=3.1->seaborn) (0.11.0)
Requirement already satisfied: packaging>=20.0 in /home/yekyaw.thu/.conda/envs/vit/lib/python3.8/site-packages (from matplotlib!=3.6.1,>=3.1->seaborn) (21.3)
Requirement already satisfied: pytz>=2020.1 in /home/yekyaw.thu/.conda/envs/vit/lib/python3.8/site-packages (from pandas>=0.25->seaborn) (2022.1)
Requirement already satisfied: six>=1.5 in /home/yekyaw.thu/.conda/envs/vit/lib/python3.8/site-packages (from python-dateutil>=2.7->matplotlib!=3.6.1,>=3.1->seaborn) (1.16.0)
Installing collected packages: pandas, seaborn
Successfully installed pandas-1.5.1 seaborn-0.12.1
(vit) yekyaw.thu@gpu:~/tool/graphviz$
I run following code:
pred_class_resnet50 = ViT_model.predict(x_test)
conf_matrix(pred_class_resnet50)got following results:
313/313 [==============================] - 4s 9ms/step
Classification Report:
precision recall f1-score support
airplane 0.64 0.68 0.66 1000
automobile 0.67 0.78 0.72 1000
bird 0.52 0.54 0.53 1000
cat 0.45 0.47 0.46 1000
deer 0.56 0.53 0.55 1000
dog 0.54 0.53 0.54 1000
frog 0.72 0.65 0.68 1000
horse 0.66 0.64 0.65 1000
ship 0.73 0.73 0.73 1000
truck 0.71 0.63 0.67 1000
accuracy 0.62 10000
macro avg 0.62 0.62 0.62 10000
weighted avg 0.62 0.62 0.62 10000
checked the output heatmap.png file under current running folder:
(vit) yekyaw.thu@gpu:~$ ls
4github authorized_keys example.txt exp heatmap.png model.png tool vit-model-testing1.ipynb
(vit) yekyaw.thu@gpu:~$
Successfully testing ViT model building on Keras with CIFAR-10 dataset!!!
- https://docs.anaconda.com/anaconda/user-guide/tasks/remote-jupyter-notebook/
- https://towardsdatascience.com/remote-computing-with-jupyter-notebooks-5b2860f761e8
- https://github.com/suvoooo/Learn-TensorFlow/blob/master/ViT_TensorFlow/Understand%26Implement_VIT_TensorFlow.ipynb
- https://en.wikipedia.org/wiki/CIFAR-10#:~:text=The%20CIFAR%2D10%20dataset%20contains,photos%20often%20learn%20by%20example.
- https://www.cs.toronto.edu/~kriz/cifar.html