Merge branch 'nuts-models' of github.com:yebai/Turing.jl into nuts-mo…

…dels # Conflicts: # benchmarks/normal-mixture-stan.run.jl # benchmarks/simple-normal-mixture-stan.run.jl # example-models/benchmarks/simple-normal-mixture-stan.run.jl
TuringLang · May 5, 2017 · 72deab9 · 72deab9
2 parents 641a8fd + 2ea3de1
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diff --git a/benchmarks/simple-normal-mixture-stan.run.jl b/benchmarks/simple-normal-mixture-stan.run.jl
@@ -0,0 +1,13 @@
+include("simple-normal-mixture-stan.model.jl")
+include("simple-normal-mixture-stan.data.jl")
+
+stan_model_name = "normalmixture"
+simplenormalmixturestan = Stanmodel(name=stan_model_name, model=simplenormalmixturemodel, nchains=1);
+
+nm_stan_sim = stan(simplenormalmixturestan, [Dict("N"=>100, "y"=>simplenormalmixturestandata[1]["y"][1:100])], CmdStanDir=CMDSTAN_HOME, summary=false)
+# describe(nm_stan_sim)
+
+nm_theta = nm_stan_sim[1:1000, ["theta"], :].value[:]
+nm_mu_1 = nm_stan_sim[1:1000, ["mu.1"], :].value[:]
+nm_mu_2 = nm_stan_sim[1:1000, ["mu.2"], :].value[:]
+nm_time = get_stan_time(stan_model_name)
diff --git a/example-models/benchmarks/bernoulli-stan.data.jl b/example-models/benchmarks/bernoulli-stan.data.jl
diff --git a/example-models/benchmarks/bernoulli-stan.model.jl b/example-models/benchmarks/bernoulli-stan.model.jl
diff --git a/example-models/benchmarks/bernoulli.data.jl b/example-models/benchmarks/bernoulli.data.jl
diff --git a/example-models/benchmarks/bernoulli.model.jl b/example-models/benchmarks/bernoulli.model.jl
diff --git a/example-models/benchmarks/lda-stan.data.jl b/example-models/benchmarks/lda-stan.data.jl
diff --git a/example-models/benchmarks/lda-stan.model.jl b/example-models/benchmarks/lda-stan.model.jl
diff --git a/example-models/benchmarks/lda.model.jl b/example-models/benchmarks/lda.model.jl