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Hi! I just debug the code and found that there may be something wrong with the parser of BeautifulSoup package. I changed the way from 'lxml' to 'html.parser' just now and it works. I also updated the annotation of the code, and hope it will help. |
Yes, I also find it that you miss Html.parser, can you tell me where from you get the smile because am familiar with such type of smile and one thing more I think spider code needs to refine because the target is not collecting with this code am working on it maybe I find it soon and where from I can get the event number? |
The smiles in my database have been transformed with RDKit. You can search how to use RDKit to transform the SMILES into fingerprints. Here I transform SMILES into 881 dimension vectors. |
Thanks for consideration can you guide me what is an exact prediction in it, I have print and check that [3. 2. 0. ... 2. 0. 0.] I am getting it as a prediction case or y_true. is it due to one-hot encoding? |
The original prediction has the shape of [batch_size, event_number], and it corresponds to the shape of y_true_one_hot. |
i want to know that what we predict as you have said that it is due to batch size it means real one is 3 if I talk about for only one so this 3 means mechanism and action? |
I just want to explore it on one drug as x_test means how it is working? |
Yes, after you get the prediction result 3 for a drug-drug pair. Then you have look up the mapping relationship between your labels and mechanism, action. So that you can know the potential DDI event between the pair. |
can we discuss it in depth with another platform rather than posting here? |
Leave your IM app(telegram, what’s app etc) and account and I’ll contact you there. |
+923004146023 |
Hi! Which IM app do you use? I didn't find you on telegram. |
Whatsapp +923004146023
…On Fri, Oct 9, 2020, 6:01 PM Yifan Deng ***@***.***> wrote:
Hi! Which IM app do you use? I didn't find you on telegram.
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Are you talking about smiles to MOL ?? |
I am running the DRKG_drug_spider.py file but always it is printing 150???
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