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DESCRIPTION
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DESCRIPTION
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Package: X.ING
Type: Package
Title: Package in R for Cross-INtegrative Genomics (X-ING)
Version: 0.1.0
Author: Yihao Lu, Meritxell Oliva, Brandon Pierce, Jin Liu and Lin Chen
Maintainer: Yihao Lu <yihaolu@uchicago.edu>
Description: X-ING (Cross-INtegrative Genomics) is proposed for cross-omics and cross-context integrative analysis of summary-level data.
X-ING takes as input the statistic matrices from multiple omics studies, each with multivariate contexts. It models the latent binary association status of each statistic, and captures the omics-shared and context-shared major patterns in a hierarchical Bayesian model.
Via the modeling of latent binary status, X-ING enables the cross-feature integration of effects.
Encoding: UTF-8
LazyData: true
Imports: MASS (>= 7.3),
CCA (>= 1.2.1),
RGCCA (>= 2.1.2),
Rcpp (>= 1.0.8.3)
License: GPL-3
LinkingTo: Rcpp, RcppArmadillo,BH, RcppDist
RoxygenNote: 7.2.3