API

Import:

import spycone as spy

spycone

Import dataset --------.. autoclass:: dataset

Import and store biological network ------------.. autoclass:: BioNetwork

Preprocessing -----------

preprocess

Isoform-level function

iso_function

Perfom clustering ------------

clustering

GO terms enrichment analysis ----------

list_gsea

clusters_gsea

modules_gsea

list_genesets

run_domino

run_domain_domino

Visualization -----------

vis_all_clusters

switch_plot

gsea_plot

vis_modules

vis_better_modules

Splicing factor analysis -------------.. autofunction:: SF_coexpression .. autofunction:: SF_motifsearch