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ADD Slice Mapping
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YongLiuLab committed Sep 2, 2019
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24 changes: 24 additions & 0 deletions source/VIEW_Slice_Mapping.txt
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Slice Mapping
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This function is used to visualize 3D volume by cut it into no more than 19 slices. All slices will be displayed in a single window, overlapped with the background volume. We can choose the range of displaying if necessary.

.. image:: _images/slice_mapping.png
:align: right

* **view angle**: direction of slice viewing
* **slice order**: choose which slice(s) to display
* **bg**: directory of backgroud volume file
* **brain vol**: directory of displayed volume file
* **white background**: the background of the display window will be white if checked, otherwise it will be black.
* **only positive**: only voxels with positive value will be displayed if checked
* **only negative**: only voxels with negetive value will be displayed if checked
* **expand display range**: if checked, the voxels with value out of range will be displayed as the threshold value
* **colormap**: choose the color map of slice viewing
* **thr vol**: set the range to generate a mask for input volume, seperated by ','.
* **col title**: title of the colorbar

- **Buttons**:
- **S**: Save parameters of the current panel to a :file:`\*.mat` file. The :file:`\*.mat` can be further loaded for the panel or be used in a script processing.
- **L**: Load parameters from :file:`\*.mat` for the current panel.
- **?**: Help information.
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