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YongLiuLab
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Slice Mapping | ||
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This function is used to visualize 3D volume by cut it into no more than 19 slices. All slices will be displayed in a single window, overlapped with the background volume. We can choose the range of displaying if necessary. | ||
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.. image:: _images/slice_mapping.png | ||
:align: right | ||
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* **view angle**: direction of slice viewing | ||
* **slice order**: choose which slice(s) to display | ||
* **bg**: directory of backgroud volume file | ||
* **brain vol**: directory of displayed volume file | ||
* **white background**: the background of the display window will be white if checked, otherwise it will be black. | ||
* **only positive**: only voxels with positive value will be displayed if checked | ||
* **only negative**: only voxels with negetive value will be displayed if checked | ||
* **expand display range**: if checked, the voxels with value out of range will be displayed as the threshold value | ||
* **colormap**: choose the color map of slice viewing | ||
* **thr vol**: set the range to generate a mask for input volume, seperated by ','. | ||
* **col title**: title of the colorbar | ||
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- **Buttons**: | ||
- **S**: Save parameters of the current panel to a :file:`\*.mat` file. The :file:`\*.mat` can be further loaded for the panel or be used in a script processing. | ||
- **L**: Load parameters from :file:`\*.mat` for the current panel. | ||
- **?**: Help information. |
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