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add 'Download' in main menu
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glofe committed Nov 12, 2019
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41 changes: 41 additions & 0 deletions source/Download.txt
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Download
--------------------------------------------
* You can get the latest version of BRANT from
https://github.com/YongLiuLab/brant-stable/archive/master.zip

* Some functions are based on SPM, you can get it from
http://www.fil.ion.ucl.ac.uk/spm/software/spm12

* Circos in STEP 8 can be downloaded from
http://circos.ca/distribution/circos-0.69-5.tgz

* Unzip the *brant-master.zip* file and move both brant and spm12 folders to :file:`/path/of/toolbox`. (The path can be anywhere in your computer as long as it's in English)

* Configure SPM paths:

1. Click *Set Path* in MATLAB

2. Click *add folder*

3. Select SPM's root folder

4. Run ``spm fmri`` in MATLAB's Command Window to let spm add its subfolders. (Note that some SPM's subfolders are called internally in SPM and should not be added in MATLAB's search path. Scripts in those folders are conflicting with MATLAB functions, and could cause untraceable errors)

* Configure BRANT paths:

1. Click *Set Path* in MATLAB

2. Click *Add with subfolders*

3. Select the unzipped BRANT folder

4. Click *Save*.

.. tip::
* An alternative way to configure both SPM and BRANT Paths:
* Run in MATLAB's Command Window:
* ``cd('/path/of/unzipped/brant/');`` % to set current working directory to the unzipped brant
* ``brant_configure_paths;`` % to add BRANT paths (same as *add with subfolders*)
* ``brant_configure_paths('/path/of/spm12/');`` % to add SPM paths


2 changes: 2 additions & 0 deletions source/index.txt
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Expand Up @@ -40,6 +40,8 @@ Functions of BRANT are arranged into 7 modules, which are preprocessing, functio
Menu_VIEW

Menu_examples

Download

FAQs

Expand Down

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