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I was trying to run SICER2 first time and faced a python error that was not informative. Later I noticed in the chromosome list output, the UCSC's chr prefixes which I don't have in the ENSEMBL assembly I used, and I added chr to them all in the bed file, and it worked that time without that error.
The text was updated successfully, but these errors were encountered:
I was trying to run SICER2 first time and faced a python error that was not informative. Later I noticed in the chromosome list output, the UCSC's chr prefixes which I don't have in the ENSEMBL assembly I used, and I added chr to them all in the bed file, and it worked that time without that error.
The text was updated successfully, but these errors were encountered: