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Preprocess the Panx2.bed file to remove redundancy with threshold of 1
Removing temporary directory and all files in it.
multiprocessing.pool.RemoteTraceback:
"""
Traceback (most recent call last):
File "/usr/local/python/3.9.10-gcc11.2.0-rv2ln4esaesugyvk2qty4ur6nlwkbtea/lib/python3.9/multiprocessing/pool.py", line 125, in worker
result = (True, func(*args, **kwds))
File "/usr/local/python/3.9.10-gcc11.2.0-rv2ln4esaesugyvk2qty4ur6nlwkbtea/lib/python3.9/multiprocessing/pool.py", line 48, in mapstar
return list(map(*args))
File "/usr/local/sicer2/1.0.3/sicer2-1.0.3/lib/python3.9/site-packages/sicer/src/remove_redundant_reads.py", line 133, in find_and_filter_reads
chrom_reads = match_by_chrom(path_to_file, chrom) # Separates all reads by chromosome
File "/usr/local/sicer2/1.0.3/sicer2-1.0.3/lib/python3.9/site-packages/sicer/src/remove_redundant_reads.py", line 120, in match_by_chrom
processed_reads[i] = tuple(reads)
ValueError: invalid literal for int() with base 10: '.'
"""
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
Traceback (most recent call last):
File "/usr/local/sicer2/1.0.3/sicer2-1.0.3/bin/sicer", line 235, in
main()
File "/usr/local/sicer2/1.0.3/sicer2-1.0.3/bin/sicer", line 229, in main
run_SICER.main(args)
File "/usr/local/sicer2/1.0.3/sicer2-1.0.3/lib/python3.9/site-packages/sicer/main/run_SICER.py", line 52, in main
total_treatment_read_count = remove_redundant_reads.main(args, args.treatment_file, pool)
File "/usr/local/sicer2/1.0.3/sicer2-1.0.3/lib/python3.9/site-packages/sicer/src/remove_redundant_reads.py", line 147, in main
filtered_result = pool.map(find_and_filter_reads_partial, chroms)
File "/usr/local/python/3.9.10-gcc11.2.0-rv2ln4esaesugyvk2qty4ur6nlwkbtea/lib/python3.9/multiprocessing/pool.py", line 364, in map
return self._map_async(func, iterable, mapstar, chunksize).get()
File "/usr/local/python/3.9.10-gcc11.2.0-rv2ln4esaesugyvk2qty4ur6nlwkbtea/lib/python3.9/multiprocessing/pool.py", line 771, in get
raise self._value
ValueError: invalid literal for int() with base 10: '.'
Finish
The text was updated successfully, but these errors were encountered:
Start
Running SICER with given arguments
Preprocess the Panx2.bed file to remove redundancy with threshold of 1
Removing temporary directory and all files in it.
multiprocessing.pool.RemoteTraceback:
"""
Traceback (most recent call last):
File "/usr/local/python/3.9.10-gcc11.2.0-rv2ln4esaesugyvk2qty4ur6nlwkbtea/lib/python3.9/multiprocessing/pool.py", line 125, in worker
result = (True, func(*args, **kwds))
File "/usr/local/python/3.9.10-gcc11.2.0-rv2ln4esaesugyvk2qty4ur6nlwkbtea/lib/python3.9/multiprocessing/pool.py", line 48, in mapstar
return list(map(*args))
File "/usr/local/sicer2/1.0.3/sicer2-1.0.3/lib/python3.9/site-packages/sicer/src/remove_redundant_reads.py", line 133, in find_and_filter_reads
chrom_reads = match_by_chrom(path_to_file, chrom) # Separates all reads by chromosome
File "/usr/local/sicer2/1.0.3/sicer2-1.0.3/lib/python3.9/site-packages/sicer/src/remove_redundant_reads.py", line 120, in match_by_chrom
processed_reads[i] = tuple(reads)
ValueError: invalid literal for int() with base 10: '.'
"""
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
Traceback (most recent call last):
File "/usr/local/sicer2/1.0.3/sicer2-1.0.3/bin/sicer", line 235, in
main()
File "/usr/local/sicer2/1.0.3/sicer2-1.0.3/bin/sicer", line 229, in main
run_SICER.main(args)
File "/usr/local/sicer2/1.0.3/sicer2-1.0.3/lib/python3.9/site-packages/sicer/main/run_SICER.py", line 52, in main
total_treatment_read_count = remove_redundant_reads.main(args, args.treatment_file, pool)
File "/usr/local/sicer2/1.0.3/sicer2-1.0.3/lib/python3.9/site-packages/sicer/src/remove_redundant_reads.py", line 147, in main
filtered_result = pool.map(find_and_filter_reads_partial, chroms)
File "/usr/local/python/3.9.10-gcc11.2.0-rv2ln4esaesugyvk2qty4ur6nlwkbtea/lib/python3.9/multiprocessing/pool.py", line 364, in map
return self._map_async(func, iterable, mapstar, chunksize).get()
File "/usr/local/python/3.9.10-gcc11.2.0-rv2ln4esaesugyvk2qty4ur6nlwkbtea/lib/python3.9/multiprocessing/pool.py", line 771, in get
raise self._value
ValueError: invalid literal for int() with base 10: '.'
Finish
The text was updated successfully, but these errors were encountered: