.gitignore

###################
# Temporary files #
###################

# snakemake associated files
.snakemake/
scripts/snakemake/.snakemake.*

# emacs temorary files
*~

# other temporary files
\#*\#
*.swp

# R temporary files
.RData
.Rhistory

# jupyter notebook checkpoints
.ipynb_checkpoints/

####################
# Real data        #
####################

# all real data
samples/

# all atlas data
atlas/

# all test output data
# This is specified in separate .gitignore in
# tests/

# all annotation data
annotation/

# logs
*.log
nohup.out
logs/

# graphical representations of the snakemake pipeline
*graph*.png
*graph*.pdf
*dag*.png

# Actual configs, design files and run scripts
# Examples for tests have been created which will be synchronized
config_*.yaml
run_*.sh
pipeline_graph.sh
samples_*.tsv

#######################
# Tests and analyses  #
#######################

# sandbox
sandbox/