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fskxo-instructions.json
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fskxo-instructions.json
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[
{
"file": "FSKX_additional_Vocabulary.xlsx",
"sheet": "objectProperties",
"qtt_name": "additional-objProps_qtt.tsv",
"type": "objectProperty",
"language": "en",
"template_cols": [
{
"name": "Property Label",
"column": "Label",
"template": "LABEL",
"transformations": []
},
{
"name": "Definition",
"column": "Description",
"template": "AL http://purl.obolibrary.org/obo/IAO_0000115@en",
"transformations": []
},
{
"name": "External Definition",
"column": "external Definition",
"template": "AL http://purl.org/dc/terms/source@en",
"transformations": []
}
],
"drop_rows": []
},
{
"file": "FSKX_additional_Vocabulary.xlsx",
"sheet": "datatypeProperties",
"qtt_name": "additional-dataTypeProps_qtt.tsv",
"type": "datatypeProperty",
"language": "en",
"template_cols": [
{
"name": "Property Label",
"column": "Label",
"template": "LABEL",
"transformations": []
},
{
"name": "Definition",
"column": "Description",
"template": "AL http://purl.obolibrary.org/obo/IAO_0000115@en",
"transformations": []
},
{
"name": "External Definition",
"column": "external Definition",
"template": "AL http://purl.org/dc/terms/source@en",
"transformations": []
},
{
"name": "Abbreviation",
"column": "Abbreviation",
"template": "A http://www.geneontology.org/formats/oboInOwl#hasSynonym",
"transformations": []
}
],
"drop_rows": []
},
{
"file": "Controlled_Vocabularies_Master_Table_V1.04.xlsx",
"sheet": "Product treatment",
"qtt_name": "process_qtt.tsv",
"type": "individual",
"language": "en",
"parent": {
"parent_superclass": "http://purl.obolibrary.org/obo/BFO_0000015",
"parent_label": "Product treatment"
},
"template_cols": [
{
"name": "Entity Label",
"column": "Value",
"template": "LABEL",
"transformations": []
},
{
"name": "Definition",
"column": "Comment",
"template": "AL http://purl.obolibrary.org/obo/IAO_0000115@en",
"transformations": []
},
{
"name": "Cross reference",
"column": "ID",
"template": "A http://www.geneontology.org/formats/oboInOwl#hasDbXref",
"transformations": [
{
"type": "prefix",
"params": ["EFSA_SSD2:"]
}
]
}
],
"drop_rows": [33, 51]
},
{
"file": "Controlled_Vocabularies_Master_Table_V1.04.xlsx",
"sheet": "Parameter distribution",
"qtt_name": "param_dist_qtt.tsv",
"type": "individual",
"language": "en",
"parent": {
"parent_superclass": "http://purl.obolibrary.org/obo/BFO_0000019",
"parent_label": "Parameter distribution"
},
"template_cols": [
{
"name": "Entity Label",
"column": "Value",
"template": "LABEL",
"transformations": []
},
{
"name": "Definition source",
"column": "Comment",
"template": "A http://purl.obolibrary.org/obo/IAO_0000119",
"transformations": []
},
{
"name": "Cross reference",
"column": "ID",
"template": "A http://www.geneontology.org/formats/oboInOwl#hasDbXref",
"transformations": [
{
"type": "prefix",
"params": ["EFSA_SSD2:"]
}
]
}
],
"drop_rows": [105,154]
},
{
"file": "Controlled_Vocabularies_Master_Table_V1.04.xlsx",
"sheet": "Language",
"qtt_name": "language_qtt.tsv",
"type": "individual",
"language": "en",
"parent": {
"parent_superclass": "http://purl.obolibrary.org/obo/BFO_0000141",
"parent_label": "Language"
},
"template_cols": [
{
"name": "Entity Label",
"column": "Value",
"template": "LABEL",
"transformations": []
}
],
"drop_rows": [20]
},
{
"file": "Controlled_Vocabularies_Master_Table_V1.04.xlsx",
"sheet": "Product-matrix name",
"qtt_name": "product-matrix_qtt.tsv",
"type": "individual",
"language": "en",
"parent": {
"parent_superclass": "http://purl.obolibrary.org/obo/BFO_0000030",
"parent_label": "Product-matrix"
},
"template_cols": [
{
"name": "Entity Label",
"column": "Value",
"template": "LABEL",
"transformations": []
},
{
"name": "Scientific name",
"column": "Comment",
"template": "A http://www.geneontology.org/formats/oboInOwl#hasSynonym",
"transformations": [
{
"type": "replace",
"params": ["None", ""]
}]
}
],
"drop_rows": [198, 208]
},
{
"file": "Controlled_Vocabularies_Master_Table_V1.04.xlsx",
"sheet": "Method of production",
"qtt_name": "method-of-production_qtt.tsv",
"type": "individual",
"language": "en",
"parent": {
"parent_superclass": "http://purl.obolibrary.org/obo/BFO_0000015",
"parent_label": "Method of production"
},
"template_cols": [
{
"name": "Entity Label",
"column": "Value",
"template": "LABEL",
"transformations": []
},
{
"name": "Definition",
"column": "Comment",
"template": "AL http://purl.obolibrary.org/obo/IAO_0000115@en",
"transformations": []
}
],
"drop_rows": [10, 12]
},
{
"file": "Controlled_Vocabularies_Master_Table_V1.04.xlsx",
"sheet": "Packaging",
"qtt_name": "packaging_qtt.tsv",
"type": "individual",
"language": "en",
"parent": {
"parent_superclass": "http://purl.obolibrary.org/obo/BFO_0000019",
"parent_label": "Packaging"
},
"template_cols": [
{
"name": "Entity Label",
"column": "Value",
"template": "LABEL",
"transformations": []
}
],
"drop_rows": [21, 23]
},
{
"file": "Controlled_Vocabularies_Master_Table_V1.04.xlsx",
"sheet": "Country",
"qtt_name": "country_qtt.tsv",
"type": "individual",
"language": "en",
"parent": {
"parent_superclass": "http://purl.obolibrary.org/obo/BFO_0000006",
"parent_label": "Country"
},
"template_cols": [
{
"name": "Entity Label",
"column": "Value",
"template": "LABEL",
"transformations": []
}
],
"drop_rows": [244]
},
{
"file": "Controlled_Vocabularies_Master_Table_V1.04.xlsx",
"sheet": "Area of origin",
"qtt_name": "area_of_origin_qtt.tsv",
"type": "individual",
"language": "en",
"parent": {
"parent_superclass": "http://purl.obolibrary.org/obo/BFO_0000006",
"parent_label": "Area of origin"
},
"template_cols": [
{
"name": "Entity Label",
"column": "Value",
"template": "LABEL",
"transformations": []
}
],
"drop_rows": []
},
{
"file": "Controlled_Vocabularies_Master_Table_V1.04.xlsx",
"sheet": "Fisheries area",
"qtt_name": "fisheries_area_qtt.tsv",
"type": "individual",
"language": "en",
"parent": {
"parent_superclass": "http://purl.obolibrary.org/obo/BFO_0000006",
"parent_label": "Fisheries area"
},
"template_cols": [
{
"name": "Entity Label",
"column": "Value",
"template": "LABEL",
"transformations": []
}
],
"drop_rows": []
},
{
"file": "Controlled_Vocabularies_Master_Table_V1.04.xlsx",
"sheet": "Hazard type",
"qtt_name": "hazard_type_qtt.tsv",
"type": "individual",
"language": "en",
"parent": {
"parent_superclass": "http://purl.obolibrary.org/obo/BFO_0000030",
"parent_label": "Hazard type"
},
"template_cols": [
{
"name": "Entity Label",
"column": "Value",
"template": "LABEL",
"transformations": []
}
],
"drop_rows": [6,9]
},
{
"file": "Controlled_Vocabularies_Master_Table_V1.04.xlsx",
"sheet": "Hazard name",
"qtt_name": "hazard_name_qtt.tsv",
"type": "individual",
"language": "en",
"parent": {
"parent_superclass": "http://purl.obolibrary.org/obo/BFO_0000030",
"parent_label": "Hazard"
},
"template_cols": [
{
"name": "Entity Label",
"column": "Value",
"template": "LABEL",
"transformations": []
}
],
"drop_rows": [4077, 4078, 4131, 8953, 8954]
},
{
"file": "Controlled_Vocabularies_Master_Table_V1.04.xlsx",
"sheet": "Hazard ind-sum",
"qtt_name": "hazard_ind-sum_qtt.tsv",
"type": "individual",
"language": "en",
"parent": {
"parent_superclass": "http://purl.obolibrary.org/obo/BFO_0000001",
"parent_label": "Hazard ind-sum"
},
"template_cols": [
{
"name": "Entity Label",
"column": "Value",
"template": "LABEL",
"transformations": []
}
],
"drop_rows": [3]
},
{
"file": "Controlled_Vocabularies_Master_Table_V1.04.xlsx",
"sheet": "Population name",
"qtt_name": "population_name_qtt.tsv",
"type": "individual",
"language": "en",
"parent": {
"parent_superclass": "http://purl.obolibrary.org/obo/BFO_0000030",
"parent_label": "Population"
},
"template_cols": [
{
"name": "Entity Label",
"column": "Value",
"template": "LABEL",
"transformations": []
}
],
"drop_rows": [21]
},
{
"file": "Controlled_Vocabularies_Master_Table_V1.04.xlsx",
"sheet": "Region",
"qtt_name": "region_qtt.tsv",
"type": "individual",
"parent": {
"parent_superclass": "http://purl.obolibrary.org/obo/BFO_0000006",
"parent_label": "Region"
},
"template_cols": [
{
"name": "Entity Label",
"column": "Value",
"template": "LABEL",
"transformations": []
}
],
"drop_rows": []
},
{
"file": "Controlled_Vocabularies_Master_Table_V1.04.xlsx",
"sheet": "Study Assay Technology Type",
"qtt_name": "study_assay_technology_type_qtt.tsv",
"type": "individual",
"language": "en",
"parent": {
"parent_superclass": "http://purl.obolibrary.org/obo/BFO_0000141",
"parent_label": "Study Assay Technology"
},
"template_cols": [
{
"name": "Entity Label",
"column": "Value",
"template": "LABEL",
"transformations": []
},
{
"name": "Definition",
"column": "Comment",
"template": "AL http://purl.obolibrary.org/obo/IAO_0000115@en",
"transformations": []
}
],
"drop_rows": [144]
},
{
"file": "Controlled_Vocabularies_Master_Table_V1.04.xlsx",
"sheet": "Accreditation procedure Ass.Tec",
"qtt_name": "accreditation_procedure_qtt.tsv",
"type": "individual",
"language": "en",
"parent": {
"parent_superclass": "http://purl.obolibrary.org/obo/BFO_0000015",
"parent_label": "Accreditation procedure for Assay Technology"
},
"template_cols": [
{
"name": "Entity Label",
"column": "Value",
"template": "LABEL",
"transformations": []
}
],
"drop_rows": [5]
},
{
"file": "Controlled_Vocabularies_Master_Table_V1.04.xlsx",
"sheet": "Sampling strategy",
"qtt_name": "sampling_strategy_qtt.tsv",
"type": "individual",
"language": "en",
"parent": {
"parent_superclass": "http://purl.obolibrary.org/obo/BFO_0000015",
"parent_label": "Sampling strategy"
},
"template_cols": [
{
"name": "Entity Label",
"column": "Value",
"template": "LABEL",
"transformations": []
},
{
"name": "Definition",
"column": "Comment",
"template": "AL http://purl.obolibrary.org/obo/IAO_0000115@en",
"transformations": []
}
],
"drop_rows": [4, 6]
},
{
"file": "Controlled_Vocabularies_Master_Table_V1.04.xlsx",
"sheet": "Type of sampling program",
"qtt_name": "type_of_sampling_program_qtt.tsv",
"type": "individual",
"language": "en",
"parent": {
"parent_superclass": "http://purl.obolibrary.org/obo/BFO_0000015",
"parent_label": "Sampling program"
},
"template_cols": [
{
"name": "Entity Label",
"column": "Value",
"template": "LABEL",
"transformations": []
}
],
"drop_rows": [21]
},
{
"file": "Controlled_Vocabularies_Master_Table_V1.04.xlsx",
"sheet": "Sampling method",
"qtt_name": "sampling_method_qtt.tsv",
"type": "individual",
"language": "en",
"parent": {
"parent_superclass": "http://purl.obolibrary.org/obo/BFO_0000015",
"parent_label": "Sampling method"
},
"template_cols": [
{
"name": "Entity Label",
"column": "Value",
"template": "LABEL",
"transformations": []
},
{
"name": "Standards",
"column": "Comment",
"template": "AL http://purl.org/dc/terms/source@en",
"transformations": []
}
],
"drop_rows": [13, 16, 19]
},
{
"file": "Controlled_Vocabularies_Master_Table_V1.04.xlsx",
"sheet": "Sampling point",
"qtt_name": "sampling_point_qtt.tsv",
"type": "individual",
"language": "en",
"parent": {
"parent_superclass": "http://purl.obolibrary.org/obo/BFO_0000015",
"parent_label": "Sampling point"
},
"template_cols": [
{
"name": "Entity Label",
"column": "Value",
"template": "LABEL",
"transformations": []
}
],
"drop_rows": [42, 66]
},
{
"file": "Controlled_Vocabularies_Master_Table_V1.04.xlsx",
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