Skip to content

Latest commit

 

History

History
78 lines (67 loc) · 1.8 KB

specfem3d_globe.rst

File metadata and controls

78 lines (67 loc) · 1.8 KB
Raw

Specfem3d_globe

Introduction

SPECFEM3D Globe simulates global and regional (continental-scale) seismic wave propagation. This module conflicts with RCAC 'openmpi' modules - unload them before use (there is a built-in OpenMPI inside the container). For more information, please check: Home page: https://geodynamics.org/cig/software/specfem3d_globe/ Docker: https://www.amd.com/en/technologies/infinity-hub/specfem3d_globe

Versions

  • 20210322--h1ee10977

Commands

  • xadd_model_iso
  • xadd_model_tiso
  • xadd_model_tiso_cg
  • xadd_model_tiso_iso
  • xaddition_sem
  • xclip_sem
  • xcombine_AVS_DX
  • xcombine_paraview_strain_data
  • xcombine_sem
  • xcombine_surf_data
  • xcombine_vol_data
  • xcombine_vol_data_vtk
  • xconvolve_source_timefunction
  • xcreate_cross_section
  • xcreate_header_file
  • xcreate_movie_AVS_DX
  • xcreate_movie_GMT_global
  • xdetect_duplicates_stations_file
  • xdifference_sem
  • xextract_database
  • xinterpolate_model
  • xmeshfem3D
  • xsmooth_laplacian_sem
  • xsmooth_sem
  • xspecfem3D
  • xsum_kernels
  • xsum_preconditioned_kernels
  • xwrite_profile
  • benchmark
  • mpirun
  • mpiexec
  • ompi_info

Module

You can load the modules by:

module load rocmcontainers
module load specfem3d_globe

Example job

Warning

Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.

To run specfem3d_globe on our clusters:

#!/bin/bash
#SBATCH -A myallocation     # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=specfem3d_globe
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out

module --force purge
ml rocmcontainers specfem3d_globe