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train_conv_wy_2.py
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train_conv_wy_2.py
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import tensorflow as tf
import numpy as np
import os,sys
import datetime
import time
import server_bert
from logger import Logger
BASEDIR = os.path.dirname(os.path.abspath(__file__))
sys.path.append(BASEDIR)
from text_cnn_con_wy_1 import TextCNN
import datahelper3
import utils
from configure import FLAGS
from sklearn.metrics import f1_score
import warnings
import sklearn.exceptions
warnings.filterwarnings("ignore", category=sklearn.exceptions.UndefinedMetricWarning)
os.environ['CUDA_VISIBLE_DEVICES'] = '1'
from bert_serving.client import BertClient
bc = BertClient()
def train():
with tf.device('/cpu:0'):
train_text, train_y,train_text_pos, train_e1_start, train_e1_end, train_e2_start, train_e2_end, train_sentence_len = datahelper3.load_data_and_labels(FLAGS.train_path)
with tf.device('/cpu:0'):
test_text, test_y, test_text_pos, test_e1_start, test_e1_end, test_e2_start,test_e2_end, test_sentence_len = datahelper3.load_data_and_labels(FLAGS.test_path)
# Build vocabulary
# Example: x_text[3] = "A misty <e1>ridge</e1> uprises from the <e2>surge</e2>."
# ['a misty ridge uprises from the surge <UNK> <UNK> ... <UNK>']
# =>
# [27 39 40 41 42 1 43 0 0 ... 0]
# dimension = FLAGS.max_sentence_length
# print("text:",x_text)
# text_vocab_processor = tf.contrib.learn.preprocessing.VocabularyProcessor(FLAGS.max_sentence_length)
# x = np.array(list(text_vocab_processor.fit_transform(x_text)))#token
# pretrain_W = utils.load_word2vec(FLAGS.embedding_path, FLAGS.text_embedding_dim, text_vocab_processor)
# print("pretrain_w:",pretrain_W)
# print(pretrain_W.shape) #(19151,300)
# print("Text Vocabulary Size: {:d}".format(len(text_vocab_processor.vocabulary_)))
# print("vocabulary:", text_vocab_processor.vocabulary_._reverse_mapping)
# with open("vocabulary.txt","w",encoding="utf-8") as f:
# f.write(str(x))
# print("x = {0}".format(x.shape)) #（8000，90）
# print("y = {0}".format(y.shape)) #（8000，19）
# print("")
# Example: pos1[3] = [-2 -1 0 1 2 3 4 999 999 999 ... 999]
# [95 96 97 98 99 100 101 999 999 999 ... 999]
# =>
# [11 12 13 14 15 16 21 17 17 17 ... 17]
# dimension = MAX_SENTENCE_LENGTH
# pos_vocab_processor = tf.contrib.learn.preprocessing.VocabularyProcessor(FLAGS.max_sentence_length)
# pos_vocab_processor.fit(pos1 + pos2) #fit
# print("pos vocab position:", pos_vocab_processor)
# p1 = np.array(list(pos_vocab_processor.transform(pos1))) #tokens
# print("p1:", p1)
# p2 = np.array(list(pos_vocab_processor.transform(pos2)))
# print("Position Vocabulary Size: {:d}".format(len(pos_vocab_processor.vocabulary_)))
# with open("position.txt", "w", encoding="utf-8") as f:
# f.write(str(x))
# print("position_1 = {0}".format(p1.shape)) #(8000,90)
# print("position_2 = {0}".format(p2.shape)) #(8000,90)
# print("")
vocab_processor = tf.contrib.learn.preprocessing.VocabularyProcessor(FLAGS.max_sentence_length)
vocab_processor.fit(train_text_pos + test_text_pos)
train_x_pos = np.array(list(vocab_processor.transform(train_text_pos)))
test_x_pos = np.array(list(vocab_processor.transform(test_text_pos)))
# train_text = np.array(train_text_pos)
# test_text = np.array(test_text)
print("\nText Vocabulary Size: {:d}".format(len(vocab_processor.vocabulary_)))
print("train_x = {0}".format(train_x_pos.shape))
print("train_y = {0}".format(train_y.shape))
print("test_x = {0}".format(test_x_pos.shape))
print("test_y = {0}".format(test_y.shape))
# pos_vocab_processor = tf.contrib.learn.preprocessing.VocabularyProcessor(FLAGS.max_sentence_length)
# pos_vocab_processor.fit(train_pos1 + train_pos2 + test_pos1 + test_pos2)
# train_p1 = np.array(list(pos_vocab_processor.transform(train_pos1)))
# train_p2 = np.array(list(pos_vocab_processor.transform(train_pos2)))
# test_p1 = np.array(list(pos_vocab_processor.transform(test_pos1)))
# test_p2 = np.array(list(pos_vocab_processor.transform(test_pos2)))
# print("\nPosition Vocabulary Size: {:d}".format(len(pos_vocab_processor.vocabulary_)))
# print("train_p1 = {0}".format(train_p1.shape))
# print("test_p1 = {0}".format(test_p1.shape))
# print("")
x_text_to_id = {}
id_to_x_text = {}
id_train = []
for i, str1 in enumerate(train_text):
# print(str1)
x_text_to_id[str1] = i
id_to_x_text[i] = str1
id_train.append(i)
x_text_to_id = {}
id_to_x_text = {}
id_test = []
for i, str1 in enumerate(test_text):
x_text_to_id[str1] = i
id_to_x_text[i] = str1
id_test.append(i)
# # Randomly shuffle data to split into train and test(dev)
# np.random.seed(10)
# x_text_to_id = {}
# id_to_x_text = {}
# id = []
# for i, str1 in enumerate(x_text_clean):
# x_text_to_id[str1]=i
# id_to_x_text[i] = str1
# id.append(i)
# # print(x_text_to_id)
# # print(id_to_x_text)
# # print(id[0:3])
# print("id:",id)
#
# shuffle_indices = np.random.permutation(np.arange(len(y))) #len(y)=8000
# id_shuffled = np.array(id)[shuffle_indices]
#
# # # p1_shuffled = p1[shuffle_indices]
# # # p2_shuffled = p2[shuffle_indices]
# y_shuffled = y[shuffle_indices]
# # print(x_shuffled, p1_shuffled,p2_shuffled,y_shuffled)
#
# # Split train/test set
# # TODO: This is very crude, should use cross-validation
# dev_sample_index = -1 * int(FLAGS.dev_sample_percentage * float(len(y))) #x_train=7200, x_dev =800
# id_train, id_dev = id_shuffled[:dev_sample_index], id_shuffled[dev_sample_index:]
# # p1_train, p1_dev = p1_shuffled[:dev_sample_index], p1_shuffled[dev_sample_index:]
# # p2_train, p2_dev = p2_shuffled[:dev_sample_index], p2_shuffled[dev_sample_index:]
# y_train, y_dev = y_shuffled[:dev_sample_index], y_shuffled[dev_sample_index:]
# print("Train/Dev split: {:d}/{:d}\n".format(len(y_train), len(y_dev)))
# # x_train = [id_to_x_text[i] for i in id_train]
# # x_dev = [id_to_x_text[i] for i in id_dev]
# print("id_train:", id_train)
with tf.Graph().as_default():
session_conf = tf.ConfigProto(
allow_soft_placement=FLAGS.allow_soft_placement,
log_device_placement=FLAGS.log_device_placement)
session_conf.gpu_options.allow_growth = FLAGS.gpu_allow_growth
sess = tf.Session(config=session_conf)
with sess.as_default():
cnn = TextCNN(
sequence_length=FLAGS.max_sentence_length, #90
num_classes=train_y.shape[1],#19
pos_vocab_size=len(vocab_processor.vocabulary_),
pos_embedding_size = FLAGS.pos_embedding_dim,
text_embedding_size=FLAGS.text_embedding_size,#300
filter_sizes=list(map(int, FLAGS.filter_sizes.split(","))), #2,3,4,5
num_heads=FLAGS.num_heads,
num_filters=FLAGS.num_filters, #128
l2_reg_lambda=FLAGS.l2_reg_lambda) #1e-5
# Define Training procedure
global_step = tf.Variable(0, name="global_step", trainable=False)
optimizer = tf.train.AdadeltaOptimizer(FLAGS.learning_rate, FLAGS.decay_rate, 1e-6)
gvs = optimizer.compute_gradients(cnn.loss)
capped_gvs = [(tf.clip_by_value(grad, -1.0, 1.0), var) for grad, var in gvs]
train_op = optimizer.apply_gradients(capped_gvs, global_step=global_step)
# Output directory for models and summaries
timestamp = str(int(time.time()))
out_dir = os.path.abspath(os.path.join(os.path.curdir, "runs", timestamp))
print("Writing to {}\n".format(out_dir))
# Summaries for loss and accuracy
loss_summary = tf.summary.scalar("loss", cnn.loss)
acc_summary = tf.summary.scalar("accuracy", cnn.accuracy)
# Logger
logger = Logger(out_dir)
# Train Summaries
train_summary_op = tf.summary.merge([loss_summary, acc_summary])
train_summary_dir = os.path.join(out_dir, "summaries", "train")
train_summary_writer = tf.summary.FileWriter(train_summary_dir, sess.graph)
# Dev summaries
dev_summary_op = tf.summary.merge([loss_summary, acc_summary])
dev_summary_dir = os.path.join(out_dir, "summaries", "dev")
dev_summary_writer = tf.summary.FileWriter(dev_summary_dir, sess.graph)
# Checkpoint directory. Tensorflow assumes this directory already exists so we need to create it
checkpoint_dir = os.path.abspath(os.path.join(out_dir, "checkpoints"))
checkpoint_prefix = os.path.join(checkpoint_dir, "model")
if not os.path.exists(checkpoint_dir):
os.makedirs(checkpoint_dir)
saver = tf.train.Saver(tf.global_variables(), max_to_keep=FLAGS.num_checkpoints)
# saver = tf.train.import_meta_graph('/home/wangyan/relation_extraction/runs/1556982398/checkpoints/model-85.9-70800.meta')
# saver.restore(sess, tf.train.latest_checkpoint('./ckpt'))
# Write vocabulary
# text_vocab_processor.save(os.path.join(out_dir, "text_vocab"))
# pos_vocab_processor.save(os.path.join(out_dir, "pos_vocab"))
# Initialize all variables
sess.run(tf.global_variables_initializer())
# FLAGS._sess =sess
# Pre-trained word2vec
# if FLAGS.embedding_path:
# pretrain_W = utils.load_word2vec(FLAGS.embedding_path, FLAGS.text_embedding_dim, text_vocab_processor)
# sess.run(cnn.W_text.assign(pretrain_W))
# print("Success to load pre-trained word2vec model!\n")
# print("id_train:", id_train.shape)
# print("train_y", train_y.shape)
id_train = np.array(id_train) #(8000,0)
# print(id_train.shape)
# print(id_train)
# print(train_y.shape)
# print(train_y)
# print(list(zip(id_train, train_y)))
# Generate batches
batches = datahelper3.batch_iter(list(zip(train_text, train_y,train_e1_start,train_e1_end, train_e2_start,train_e2_end)),
FLAGS.batch_size, FLAGS.num_epochs)
# Training loop. For each batch...
best_f1 = 0.0 # For save checkpoint(model)
# text_embedded_chars_dev = server_bert.load_clean_vector("embedding_unclean.npy", list(id_dev), sentence_len)
# print("id_dev:",id_dev)
# print(text_embedded_chars_dev.shape) #(800 90 768)
for batch in batches:
train_bx, train_by, train_be1_start, train_be1_end, train_be2_start, train_be2_end= zip(*batch)
# print(x_batch)
# print(list(x_batch))
# print(len(x_batch)) #20
# print(len(y_batch)) #20
# Train
# text_embedded_chars = server_bert.load_vector("embedding_unclean.npy", list(train_bx)) #[20 90 768]
#print(text_embedded_chars.shape) #（20 90 768）
text_embedded_chars = bc.encode(list(train_bx))
# print(np.array(train_be1_start).shape)
# print(train_be1_start)
# print(train_be1_end)
# print("shape",text_embedded_chars.shape)
# e1_embedd = text_embedded_chars[0][train_be1_end[0]]
# # print(e1_embedd.shape)
# e2_embedd = text_embedded_chars[0][train_be2_end[0]]
# for i in range(1, text_embedded_chars.shape[0]):
# e1 = text_embedded_chars[i][train_be1_end[i]]
# # print("e1 shape",e1.shape)
# e2 = text_embedded_chars[i][train_be2_end[i]]
# e1_embedd = np.vstack((e1_embedd, e1))
# e2_embedd = np.vstack((e2_embedd, e2))
e1_index = [ i * FLAGS.max_sentence_length + train_be1_start[i] for i in range(0, text_embedded_chars.shape[0])]
e2_index = [i * FLAGS.max_sentence_length + train_be2_start[i] for i in range(0, text_embedded_chars.shape[0])]
# e1_embedd_change = tf.expand_dims(e1_embedd, axis=1)
# e2_embedd_change = tf.expand_dims(e2_embedd, axis=1)
# print(e1_embedd.shape)
# print(np.array(e1_index).shape)
# print(np.array(train_be1_start).shape)
# print(e1_index)
# print(train_be1_start)
feed_dict = {
cnn.text_embedded_chars: text_embedded_chars,
cnn.input_y: train_by,
# cnn.e1_index:e1_index,
# cnn.e2_index:e2_index,
cnn.dropout_keep_prob: FLAGS.dropout_keep_prob,
cnn.emb_dropout_keep_prob: FLAGS.emb_dropout_keep_prob
}
_, step, summaries, loss, accuracy = sess.run(
[train_op, global_step, train_summary_op, cnn.loss, cnn.accuracy], feed_dict)
train_summary_writer.add_summary(summaries, step)
# Training log display
if step % FLAGS.display_every == 0:
time_str = datetime.datetime.now().isoformat()
print("{}: step {}, loss {:g}, acc {:g}".format(time_str, step, loss, accuracy))
# Evaluation
# Evaluation
if step % FLAGS.evaluate_every == 0:
print("\nEvaluation:")
# Generate batches
test_batches = datahelper3.batch_iter(list(zip(test_text, test_y,test_e1_start, test_e1_end, test_e2_start,test_e2_end)),
FLAGS.batch_size, 1, shuffle=False)
# Training loop. For each batch...
losses = 0.0
accuracy = 0.0
predictions = []
iter_cnt = 0
for test_batch in test_batches:
test_bx, test_by,test_be1_start,test_be1_end, test_be2_start,test_be2_end = zip(*test_batch)
# a = list(test_bx)
# print(a)
# test_text_embedded_chars = server_bert.load_vector("embedding_unclean_test.npy", list(test_bx)) # [20 90 768)
test_text_embedded_chars = bc.encode(list(test_bx))
# test_e1_embedd = text_embedded_chars[0][test_be1_end[0]]
# # print(e1_embedd.shape)
# test_e2_embedd = test_text_embedded_chars[0][test_be2_end[0]]
# for i in range(1, test_text_embedded_chars.shape[0]):
# test_e1 = test_text_embedded_chars[i][test_be1_end[i]]
# # print("e1 shape", test_e1.shape)
# test_e2 = test_text_embedded_chars[i][test_be2_end[i]]
# test_e1_embedd = np.vstack((test_e1_embedd, test_e1))
# test_e2_embedd = np.vstack((test_e2_embedd, test_e2))
e1_index = [i * FLAGS.max_sentence_length + test_be1_start[i] for i in
range(0, test_text_embedded_chars.shape[0])]
e2_index = [i * FLAGS.max_sentence_length + test_be2_start[i] for i in
range(0, test_text_embedded_chars.shape[0])]
# print(np.array(e1_index).shape)
# print(np.array(test_be1_start).shape)
# print(e1_index)
# print(e2_index)
feed_dict = {
cnn.text_embedded_chars: test_text_embedded_chars,
cnn.input_y:test_by,
# cnn.e1_index:e1_index,
# cnn.e2_index:e2_index,
cnn.emb_dropout_keep_prob: 1.0,
cnn.dropout_keep_prob: 1.0
}
loss, acc, pred = sess.run(
[cnn.loss, cnn.accuracy, cnn.predictions], feed_dict)
losses += loss
accuracy += acc
predictions += pred.tolist()
iter_cnt += 1
losses /= iter_cnt
accuracy /= iter_cnt
predictions = np.array(predictions, dtype='int')
logger.logging_eval(step, loss, accuracy, predictions)
# Model checkpoint
if best_f1 < logger.best_f1:
best_f1 = logger.best_f1
path = saver.save(sess, checkpoint_prefix + "-{:.3g}".format(best_f1), global_step=step)
print("Saved model checkpoint to {}\n".format(path))
def main(_):
train()
if __name__ == "__main__":
tf.app.run()