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where is the example_data? #2

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liushoucheng opened this issue Apr 20, 2023 · 1 comment
Open

where is the example_data? #2

liushoucheng opened this issue Apr 20, 2023 · 1 comment

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@liushoucheng
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您好，没有找到例子的目录，另外SubPhaser的依赖包是不是指定的太严格了，安装一直说有软件冲突。
@zhangrengang
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zhangrengang commented Apr 21, 2023 •
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你好，Centromics例子文件比较大，尚未上传；可用自己的数据：hifi.fq.gz就是HiFi测序数据的reads，chip.bam是将ChIP测序数据用bwa之类的比对到基因组上然后转换成bam格式，merged_nodups.hic用juicer流程将HiC测序数据比对到基因组上并转换成.hic格式。

SubPhaser可以试试按这里，只装少量必需软件。

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@liushoucheng @zhangrengang