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Remove CNMF-E intermediate analysis folder #35
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Hi, @bahanonu, thanks for pointing out the problem. there is an option for avoiding saving intermediate results. Pengcheng |
Thanks. However, even with Please re-open the issue until this is resolved. |
Or do you have to run |
there are following folders/files created for running CNMF-E:
even though you set neuron.save_intermediate = false, you can still have a file intermediate_results.mat, but it should be much smaller. It only saves the results of the initialization step. This design is useful when you want to load the initialization results of an earlier run. If you don't want to keep any intermediate results, even the data_x_x_x.mat file, probably a better solution is to create another function neuron.clean_workspace() to remove these extra files. what do you think? @bahanonu |
Awesome, thanks for the description, might be good to have that as it's own wiki page (e.g. A I ran with |
Another solution is to allow the user access to |
Can you update to allow the user to specify |
@zhoupc
Can you provide an option to either put the temporary folder created for the matfile in a user defined sub-folder or delete the folder after a successful run on CNMF-E? This folder can get large and take up unnecessary space after CNMF-E has been run.
e.g. in the below section of Sources2D, instead of [] for
dir_output
input, this should be a user modifiable parameter.https://github.com/zhoupc/CNMF_E/blob/master/ca_source_extraction/%40Sources2D/Sources2D.m#L239
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