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Please updata exon index #1

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skelviper opened this issue Dec 19, 2020 · 1 comment

Contributor

skelviper commented Dec 19, 2020

Hi
Recently i'm changing my pipeline to hg19, could you update a hg19 version of file "bin_10k_FULL_index"?
Thanks.

Owner

zhuakexi commented Jan 28, 2021

New version use gencode gtf files as exon index. Forget that pre-built index. Now you give clean_splicing -r gencode.annotation.gtf

When you are changing reference genome, just use gencode.v19.annotation.gtf.gz rather than gencode.v33.annotation.gtf.gz.

zhuakexi closed this as completed

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