Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

How can I get the "HCP_visual_voxel.npz" for pre-training? #22

Open
HaoyyLi opened this issue Jul 29, 2023 · 3 comments
Open

How can I get the "HCP_visual_voxel.npz" for pre-training? #22

HaoyyLi opened this issue Jul 29, 2023 · 3 comments

Comments

@HaoyyLi
Copy link

HaoyyLi commented Jul 29, 2023

Hi

I'm reproducing this very interesting project. However, I don't know how to get the HCP dataset with the "HCP_visual_voxel.npz" to implement stageA1_mbm_pretrain.py. In fact, I was able to download the fMRI data in “nii.gz” format of the HCP 1200 dataset containing 1113 subjects. But I can't extract the ROI of the visual cortex from the nii file in 4-D and save it as HCP_visual_voxel.npz for each subject.

Can you provide more detailed implementation steps about HCP_visual_voxel.npz?

Thanks

@nojuskybartas
Copy link

nojuskybartas commented Nov 16, 2023

@HaoyyLi any luck? Facing the same issue

@y10ab1
Copy link

y10ab1 commented Nov 16, 2023

Found a clue at https://mind-vis.github.io/supplementary.pdf. Perhaps the voxels are obtained by applying some sort of atlas?
截圖 2023-11-16 下午10 18 21

@Rui00000
Copy link

@HaoyyLi any luck? Facing the same issue

Hey,have you resolved this problem?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

4 participants