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goatools包问题 #5
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你好,为了提取obo文件中GO term的定义,我们修改了 # line 132
elif line[:5] == "def: ":
rec_curr.definition = line[5:]
# line 169
self.definition = "" |
谢谢您的回复,抱歉继续打扰到您,我在执行create_onto_protein_data部分时,由于 |
你好, 另外,数据构造脚本中,运行顺序是 |
你好,我的
其中还有部分数据如下显示
请问存在这两种不同词条是否正常?我下载的是文件goa_uniprot_all.gaf.156.gz |
你好,我尝试着下载了新的goa_uniprot_all.gaf.gz,但这个数据集好像特别大,压缩文件40G无法解压缩。请问您的是这个么?我可以使用goa_uniprot_all.gpi.gz文件作替代么 |
注释数据是比较大的,解压开来有近100G吧。 |
博主你好,请问一下您在运行gen_onto_protein_data.py文件中create_go_data部分时是否出现下面类似问题:
goatools版本为1.2.3时,go_term.definition报错:没有.definition属性
goatools版本为1.0.11时,提示RecursionError: maximum recursion depth exceeded while calling a Python object
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