Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Singularity path #79

Closed
zktuong opened this issue Jun 15, 2021 · 0 comments · Fixed by #76
Closed

Singularity path #79

zktuong opened this issue Jun 15, 2021 · 0 comments · Fixed by #76
Labels
need testing Extra attention is needed to work this out

Comments

@zktuong
Copy link
Owner

zktuong commented Jun 15, 2021

If igblast and blast are installed via conda, it can interfere with singularity's attempt to call the right version of the software as the local conda bin path is appended to the front of the container's $PATH whenever the singularity image is mounted.

The current work around is unfortunately not to install igblast and blast via conda, but managed separatedly and exporting to $PATH locally, if the singularity container is also used.

@zktuong zktuong added the need testing Extra attention is needed to work this out label Jun 17, 2021
@zktuong zktuong linked a pull request Jun 17, 2021 that will close this issue
@zktuong zktuong mentioned this issue Aug 1, 2021
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
need testing Extra attention is needed to work this out
Projects
None yet
Development

Successfully merging a pull request may close this issue.

1 participant