rosalind_meme.py

# ^_^ coding:utf-8 ^_^

"""
New Motif Discovery
url: http://rosalind.info/problems/meme/

Given: A set of protein strings in FASTA format that share some motif with minimum length 20.
Return: Regular expression for the best-scoring motif.
"""

data = "../data/rosalind_meme.txt"
tool = "MEME"
tool_url = "http://meme-suite.org/tools/meme"
results = "RENLWPPDKKS[YL][GAV]YNNLQWQ[ME]T[YA]GIFYNLFRYSGDY"