-
Notifications
You must be signed in to change notification settings - Fork 8
/
_pkgdown.yml
37 lines (32 loc) · 826 Bytes
/
_pkgdown.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
pandoc: 1.19.2.4
pkgdown: 1.4.1
pkgdown_sha: ~
articles:
- title: "Tutorials"
contents: Introduction_to_pafr
template:
params:
bootswatch: flatly
#bootswatch: Solar
reference:
- title: "Reading files into R"
desc: "Functions for reading aligments and genomic intervals"
contents:
- read_paf
- read_bed
- as_paf
- title: "Plotting alignments"
desc: "Functions to produce ggplot visualisations of genome-aligments"
contents:
- dotplot
- plot_coverage
- plot_synteny
- highlight_query
- highlight_target
- theme_coverage_plot
- Gb_lab
- title: "Utility functions"
desc: "Helper functions"
contents:
- filter_secondary_alignments
- chrom_sizes