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21 Open 228 Closed
21 Open 228 Closed
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Issues list

Help needed: How to interpret the output file from "X_aggregate_comparison_bound" with multiple conditions and others...
#271 opened May 22, 2024 by c2b2pss
BINDetect - 'Annotation' object has no property 'text_from_points' only for time series
#269 opened May 6, 2024 by sngholee
3
Hi, I have the following three questions for CreateNetwork:
#265 opened Apr 20, 2024 by hyBio
1
bam and -peaks bed file in ATACorrect
#264 opened Apr 18, 2024 by 31474molly
3
Difference between --signals and --peaks
#263 opened Apr 12, 2024 by archieandrews10
1
Threshold for bounded/unbounded TFs ?
#262 opened Apr 11, 2024 by matteozoia4
1
Empty output from CreateNetwork
#260 opened Apr 4, 2024 by swethas112
2
BINDetect new adjustText error
#259 opened Mar 26, 2024 by NMaziak
1
changing clustering threshold in bindetect
#256 opened Mar 13, 2024 by sleepryansleep
3
Question Regarding the Basis of Motif Logo Creation
#253 opened Jan 30, 2024 by Myrtle-bio
1
The data contains non-finite values.
#252 opened Jan 25, 2024 by yhj-j
4
Original TOBIAS Manuscript Figure 2--Nature Communications volume 11, Article number: 4267 (2020)
#250 opened Jan 7, 2024 by c2b2pss
1
BINDetect not giving out error when the motif file is "deformed"
#248 opened Dec 16, 2023 by johannesnicolaus
2
BINDdetect vs plotHeatmap
#247 opened Dec 13, 2023 by mbergsland
3
batch effect
#241 opened Oct 27, 2023 by drosop
3
Different locus numbers across conditions and Strategies for Multi-Tissue TF Footprint Score Comparison
#239 opened Oct 25, 2023 by Myrtle-bio
3
TOBIAS ATACorrect fails on some datasets, without any error message
#235 opened Sep 29, 2023 by liz-is
4
Clustergram --- "(Clusters below threshold are colored)"
#212 opened May 9, 2023 by c2b2pss
8
Customized motif bed files as BINDetect input enhancement New feature or request
#106 opened Dec 2, 2021 by yyc0415
1
Is it possible to get the list of the TFBS around a gene and its score? documentation Improvements or additions to documentation
#19 opened May 25, 2020 by smallfade
3
What does the columns mean in edges.txt from CreateNetwork? documentation Improvements or additions to documentation enhancement New feature or request
#12 opened Apr 15, 2020 by smallfade
5
ProTip! Follow long discussions with comments:>50.