Skip to content

Issues: satijalab/seurat

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

481 Open 7,112 Closed
481 Open 7,112 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Many cells are assigned <NA> cluster when using ProjectIntegration & ProjectData function
#8965 opened May 31, 2024 by sentisci
1
Visium Voxels Don't Load Properly on Combined Seurat Object using Seurat v5.1.0 bug Something isn't working
#8964 opened May 31, 2024 by TeodoraTockovska
1
Change colors in CellScater plot
#8962 opened May 31, 2024 by nina-hahn
How to combine SCTModel.list in integrated dataset
#8961 opened May 30, 2024 by danielcgingerich
Is there a function to find the basename of all layers that are currently split?
#8960 opened May 30, 2024 by bbimber
9
I am newbie to scRNA seq data analysis. Recently I have analyzed a dataset and when plotted the results in UMAP there is already an identity given to the cells. When I tried to rename the cluster idents, it's not showing error but didn't changed anything.. Can anyone please help?
#8958 opened May 30, 2024 by DuttaAbhi02
1
Vizgen again
#8956 opened May 29, 2024 by HSvitina
Memory issues with SCT integration workaround
#8954 opened May 29, 2024 by danielcgingerich
Issue running Azimuth / accessing the reference databases bug Something isn't working
#8952 opened May 29, 2024 by jonoave
1
problem with single cell RNA-seq data
#8950 opened May 29, 2024 by viistaaa
After subclustering, manually annotation does not work.. bug Something isn't working
#8949 opened May 29, 2024 by ChoIYS98
spatstat.explore is not loaded bug Something isn't working
#8948 opened May 28, 2024 by fangpingmu
Integration Introduction vignette issue bug Something isn't working
#8947 opened May 28, 2024 by FrancoCaTo
Problem with RunPCA when specify features = VariableFeatures(obj) bug Something isn't working
#8946 opened May 28, 2024 by bellenger-l
5
Error in .subscript.2ary(x, i, , drop = TRUE) : subscript out of bounds when running FindIntegrationAnchors #1712 bug Something isn't working
#8944 opened May 28, 2024 by sropri92
visium hd support bug Something isn't working
#8943 opened May 28, 2024 by raygozag
3
Warning message: No columnames present in cell embeddings, setting to 'integratedccafull_1:50'
#8941 opened May 27, 2024 by Sirin24
Featureplot blend issue
#8940 opened May 27, 2024 by tanonymush
Warning: Layer counts isn't present in the assay object; returning NULL
#8938 opened May 27, 2024 by jianguotao
3
GSE dataset to Seurat object convert problem
#8937 opened May 27, 2024 by focusdk88
Fail to replicate results in "Mapping and annotating query datasets" bug Something isn't working
#8936 opened May 26, 2024 by yuming14
1
Error in validObject(.Object) : invalid class "ScaledMatrix" object: the supplied seed must support extract_array() bug Something isn't working
#8935 opened May 26, 2024 by Flu09
remotes::install_github("satijalab/seurat-data", quiet = TRUE) does not work bug Something isn't working
#8933 opened May 25, 2024 by asmlgkj
2
RCTD for Xenium data
#8932 opened May 25, 2024 by balthasar0810
Visium image shrunk
#8931 opened May 24, 2024 by weishwu
2
ProTip! Adding no:label will show everything without a label.