GitHub - zek12/NGS_scripts

Name		Name	Last commit message	Last commit date
Latest commit History 15 Commits
GATK_pipeline_v2_part1.sh		GATK_pipeline_v2_part1.sh
GATK_pipeline_v2_part2.sh		GATK_pipeline_v2_part2.sh
GATK_pipeline_v2_part3.sh		GATK_pipeline_v2_part3.sh
GATK_pipeline_v2_part4.sh		GATK_pipeline_v2_part4.sh
annotate_variants_hg19.sh		annotate_variants_hg19.sh
annotate_variants_hg38.sh		annotate_variants_hg38.sh
filter_variants.py		filter_variants.py
header_lines_GRCh38.txt		header_lines_GRCh38.txt
hg38ToHg19.over.chain		hg38ToHg19.over.chain
liftOver.R		liftOver.R
list_variants_by_pathway.py		list_variants_by_pathway.py

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python bash gatk pyvcf vep ngs-pipeline

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