In this repository I have created template for Nextflow -code . which can be use as base for Omics Analysis using Nextflow
Step1: Set up AWS cloud9 :
First we have to setup aws account as explained in setup.md file present in setup folder
Step2: Create nextflow scripts :
According to our need we have to write nextflow scripts . I have splitted nextflow scripts according to my wish as below :
step3: nextflow.config :
In this i have added My infomration manifest and how nextflow script should run either locally or cloud or through clusters.
- Added Manifest block
- Added Profiles - like local or AWS
- Added process block
step4 : main nextflow script :
- I have added main.nf script which includes or call different modules from modules folder
- Also this main.nf has input output directories path
step4 : modules nextflow scripts :
- For each tasks i have created seperate nextflow scripts so i can use them in main nextflow script
- This is helpful to edit or add more scripts according to our needs