v2.0.7

Updating README_db file, making changes to error reporting, sending draft release to bioconda to fix containerization issue

v2.0.6

In this release, we

• Updated URLs for use of GTDB as a reference database
• Revised code for use of --threads parameter within DIAMOND
• Changed dependencies

v2.0.5

Adding ability to use GTDB as database selection

v2.0.3

• adding wget as a dependency

v2.0.2

Very small update to v2.0.1 for integration purposes.

Changed:

• added quotes to URLs in wget calls to deal with wget utility type

v2.0.1

Added:

• flag --consensus_proportion for setting LCA strictness. Defaults to 1 (identical bitscores will trigger LCA). A value of e.g. 0.95 would mean that bitscores within 95% of the max bitscore would be considered identical for the purposes of triggering LCA
• flag --no_busco forces that BUSCO will not be run
• BUSCO is no longer a dependency for installing EUKulele

Changed:

• default for metaT file extension to .fasta instead of .fna

v1.0.6

v1.0.6 catches bioconda up to latest EUKulele version available on PyPI. The major change involved in this update is making EUKulele use bitscore as default when selecting best matches, rather than relying on percentage identity as is used later in the taxonomic assignment process.

v1.0.4

Version 1.0.4 is to catch EUKulele up on bioconda to the latest version on PyPI. The main feature of this version is a fix to the taxonomy cutoffs YAML file which was needed following the change to the default database for EUKulele.

v1.0.2b

First GitHub release of EUKulele, modified for Zenodo. Features new default MMETSP-MarRef database, and debuts the tool as a solution for taxonomic annotation of microbial eukaryotes.

v1.0.2

First GitHub release of EUKulele. Features new default MMETSP-MarRef database, and debuts the tool as a solution for taxonomic annotation of microbial eukaryotes.