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@Amber-MD

Amber Molecular Dynamics

For experienced Amber users: development versions of some parts of AmberTools
README.md
  • Amber is a collection of programs that implement biomolecular simulations at the atomic level, primarily through molecular dynamics.
  • This collection of repositories is an adjunct to the main Amber site at https://ambermd.org
  • Material here is public, but is intended for advanced users, who have already installed the codes at the web page above.
    • Several of the repositories here support the ongoing development of the Amber and AmberTools code bases and are not actually useful for running Amber.
    • The applications available in repositories here have value as standalone applications, but are also all included as part of the AmberTools distribution.

Popular repositories

  1. pytraj pytraj Public

    Python interface of cpptraj

    Jupyter Notebook 159 38

  2. cpptraj cpptraj Public

    Biomolecular simulation trajectory/data analysis.

    C++ 122 61

  3. common-dockerfiles common-dockerfiles Public

    Docker images used for the Amber project

    Dockerfile 3 4

  4. jenkins-shared-libraries jenkins-shared-libraries Public

    Shared pipelines for Jenkins

    Groovy 2

  5. .github .github Public

    just holding a README file describing what this place is about.

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