v.4.1.0

Moved ReMatCh from python 2 to python 3, with lots of bug-fixes and small improvements.
MLST mode with extended reference available for: Campylobacter jejuni, Escherichia coli, Haemophilus influenzae, Listeria monocytogenes, Salmonella enterica, Staphylococcus aureus, Streptococcus agalactiae, Streptococcus dysgalactiae, Streptococcus pneumoniae and Streptococcus pyogenes

v3.3

• Specify python2 as default Python
• Allow reads download from SRA database (using SRA toolkit)
• Include curl as alternative to wget to download reads
• Produce extra report only containing information for sequences present
• Minor bug fixes

v3.2

v3.2

v3.0

Do not run second time if no sequences left

v2.0

Correct Bowtie2 command for SE